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ProtonDistributionModel Member List

This is the complete list of members for ProtonDistributionModel, including all inherited members.

bb_charge_ProtonDistributionModel [protected]
bb_charge_full_ProtonDistributionModel [protected]
calcChargeStateIntensities_(const AASequence &peptide, const AASequence &n_term_ion, const AASequence &c_term_ion, int charge, Residue::ResidueType n_term_type, double &n_term1, double &c_term1, double &n_term2, double &c_term2, FragmentationType type)ProtonDistributionModel [protected]
calculateProtonDistribution_(const AASequence &peptide, int charge, Residue::ResidueType res_type=Residue::YIon, bool fixed_proton=false, UInt cleavage_site=0, bool use_most_basic_site=false)ProtonDistributionModel [protected]
ChargeDirected enum valueProtonDistributionModel
ChargeRemote enum valueProtonDistributionModel
check_defaults_DefaultParamHandler [protected]
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandler [protected]
defaultsToParam_()DefaultParamHandler [protected]
E_ProtonDistributionModel [protected]
E_c_term_ProtonDistributionModel [protected]
E_n_term_ProtonDistributionModel [protected]
error_name_DefaultParamHandler [protected]
FragmentationType enum nameProtonDistributionModel
getChargeStateIntensities(const AASequence &peptide, const AASequence &n_term_ion, const AASequence &c_term_ion, int charge, Residue::ResidueType n_term_type, double &n_term1, double &c_term1, double &n_term2, double &c_term2, FragmentationType type)ProtonDistributionModel
getChargeStateIntensities_(const AASequence &peptide, const AASequence &ion, int charge, Residue::ResidueType res_type)ProtonDistributionModel [protected]
getDefaults() const DefaultParamHandler
getLeftAndRightGBValues_(const AASequence &peptide, double &left_gb, double &right_gb, UInt position)ProtonDistributionModel [protected]
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getProtonAffinity_(const AASequence &ion, int charge, Residue::ResidueType res_type)ProtonDistributionModel [protected]
getProtonDistribution(HashMap< UInt, double > &bb_charges, HashMap< UInt, double > &sc_charges, const AASequence &peptide, int charge, Residue::ResidueType res_type=Residue::YIon)ProtonDistributionModel
getSubsections() const DefaultParamHandler
operator=(const ProtonDistributionModel &pdm)ProtonDistributionModel
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandler [virtual]
operator==(const DefaultParamHandler &rhs) const DefaultParamHandler [virtual]
param_DefaultParamHandler [protected]
ProtonDistributionModel()ProtonDistributionModel
ProtonDistributionModel(const ProtonDistributionModel &model)ProtonDistributionModel
sc_charge_ProtonDistributionModel [protected]
sc_charge_full_ProtonDistributionModel [protected]
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setPeptideProtonDistribution(const HashMap< UInt, double > &bb_charge, const HashMap< UInt, double > &sc_charge)ProtonDistributionModel
SideChain enum valueProtonDistributionModel
subsections_DefaultParamHandler [protected]
updateMembers_()DefaultParamHandler [protected, virtual]
~DefaultParamHandler()DefaultParamHandler [virtual]
~ProtonDistributionModel()ProtonDistributionModel [virtual]


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