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OMSSAXMLHandler.h (Maintainer: Andreas Bertsch)

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00001 // -*- Mode: C++; tab-width: 2; -*-
00002 // vi: set ts=2:
00003 //
00004 // --------------------------------------------------------------------------
00005 //                   OpenMS Mass Spectrometry Framework
00006 // --------------------------------------------------------------------------
00007 //  Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert
00008 //
00009 //  This library is free software; you can redistribute it and/or
00010 //  modify it under the terms of the GNU Lesser General Public
00011 //  License as published by the Free Software Foundation; either
00012 //  version 2.1 of the License, or (at your option) any later version.
00013 // 
00014 //  This library is distributed in the hope that it will be useful,
00015 //  but WITHOUT ANY WARRANTY; without even the implied warranty of
00016 //  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
00017 //  Lesser General Public License for more details.
00018 //
00019 //  You should have received a copy of the GNU Lesser General Public
00020 //  License along with this library; if not, write to the Free Software
00021 //  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
00022 //
00023 // --------------------------------------------------------------------------
00024 // $Maintainer: Andreas Bertsch $
00025 // --------------------------------------------------------------------------
00026 
00027 #ifndef OPENMS_FORMAT_HANDLERS_OMSSAXMLHANDLER_H
00028 #define OPENMS_FORMAT_HANDLERS_OMSSAXMLHANDLER_H
00029 
00030 #include <OpenMS/FORMAT/HANDLERS/XMLHandler.h>
00031 #include <OpenMS/METADATA/ProteinIdentification.h>
00032 #include <OpenMS/METADATA/PeptideIdentification.h>
00033 
00034 #include <vector>
00035 
00036 namespace OpenMS
00037 {
00038   namespace Internal
00039   {
00044   class OMSSAXMLHandler:
00045     public XMLHandler
00046   {
00047     public:
00048 
00050       OMSSAXMLHandler(ProteinIdentification& protein_identification, std::vector<PeptideIdentification>& peptide_identifications, const String& filename);
00051 
00053       virtual ~OMSSAXMLHandler();
00054       
00055       // Docu in base class
00056       void endElement(const XMLCh* const /*uri*/, const XMLCh* const /*local_name*/, const XMLCh* const qname);
00057       
00058       // Docu in base class
00059       void startElement(const XMLCh* const /*uri*/, const XMLCh* const /*local_name*/, const XMLCh* const qname, const xercesc::Attributes& attributes);
00060     
00061       // Docu in base class
00062       void characters(const XMLCh* const chars, unsigned int /*length*/);
00063       
00064     private:
00065       
00067       ProteinIdentification& protein_identification_;
00068 
00070       std::vector<PeptideIdentification>& peptide_identifications_;
00071 
00072       ProteinHit actual_protein_hit_;
00073 
00074       PeptideHit actual_peptide_hit_;
00075 
00076       PeptideIdentification actual_peptide_id_;
00077 
00078       ProteinIdentification actual_protein_id_;
00079 
00080       String tag_;
00081   };
00082 
00083   } // namespace Internal
00084 } // namespace OpenMS
00085 
00086 #endif // OPENMS_FORMAT_HANDLERS_OMSSAXMLHANDLER_H
00087 

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