acc_ | IsotopeWaveletTransform | [protected] |
av_MZ_spacing_ | IsotopeWaveletTransform | [protected] |
Box_ typedef | IsotopeWaveletTransform | |
c_mzs_ | IsotopeWaveletTransform | [protected] |
c_spacings_ | IsotopeWaveletTransform | [protected] |
checkPosition_(const MSSpectrum< PeakType > &candidate, const MSSpectrum< PeakType > &ref, const DoubleReal seed_mz, const UInt c, const UInt scan_index) | IsotopeWaveletTransform | [inline, protected, virtual] |
chordTrapezoidRule_(const DoubleReal a, const DoubleReal b, const DoubleReal fa, const DoubleReal fb) | IsotopeWaveletTransform | [inline, protected] |
chordTrapezoidRule_(const std::vector< DoubleReal > &x, const std::vector< DoubleReal > &y) | IsotopeWaveletTransform | [inline, protected] |
closed_boxes_ | IsotopeWaveletTransform | [protected] |
clusterSeeds_(const std::vector< MSSpectrum< PeakType > > &candidates, const MSSpectrum< PeakType > &ref, const UInt scan_index, const UInt max_charge) | IsotopeWaveletTransform | [inline, protected] |
estimatePeakCutOffs_(const DoubleReal min_mz, const DoubleReal max_mz, const UInt max_charge) | IsotopeWaveletTransform | [inline, protected] |
getAvIntens_(const MSSpectrum< PeakType > &scan) | IsotopeWaveletTransform | [inline, protected] |
getAvMZSpacing_(const MSSpectrum< PeakType > &scan, Int start_index=0, Int end_index=-1) | IsotopeWaveletTransform | [inline, protected] |
getClosedBoxes() | IsotopeWaveletTransform | [inline, virtual] |
getCubicInterpolatedValue_(const std::vector< DoubleReal > &x, const DoubleReal xi, const std::vector< DoubleReal > &y) | IsotopeWaveletTransform | [inline, protected] |
getNearBys_(const MSSpectrum< PeakType > &signal, const DoubleReal mz, const UInt start=0) const | IsotopeWaveletTransform | [inline, protected] |
getPeakCutOff_(const DoubleReal mass, const UInt z) | IsotopeWaveletTransform | [inline, protected] |
getSdIntens_(const MSSpectrum< PeakType > &scan, const DoubleReal mean) | IsotopeWaveletTransform | [inline, protected] |
getTransforms(const MSSpectrum< PeakType > &scan, std::vector< MSSpectrum< PeakType > > &transforms, const UInt max_charge, const Int mode) | IsotopeWaveletTransform | [inline, virtual] |
identifyCharges(const std::vector< MSSpectrum< PeakType > > &candidates, const MSSpectrum< PeakType > &ref, const UInt scan_index, const DoubleReal ampl_cutoff=0) | IsotopeWaveletTransform | [inline, virtual] |
IsotopeWaveletTransform(const DoubleReal min_mz, const DoubleReal max_mz, const UInt max_charge) | IsotopeWaveletTransform | [inline] |
IsotopeWaveletTransform() | IsotopeWaveletTransform | [inline, protected] |
mapSeeds2Features(const MSExperiment< PeakType > &map, const UInt max_charge, const UInt RT_votes_cutoff) | IsotopeWaveletTransform | [inline] |
open_boxes_ | IsotopeWaveletTransform | [protected] |
peak_cutoff_intercept_ | IsotopeWaveletTransform | [protected] |
peak_cutoff_slope_ | IsotopeWaveletTransform | [protected] |
prod_ | IsotopeWaveletTransform | [protected] |
psi_ | IsotopeWaveletTransform | [protected] |
push2Box_(const DoubleReal mz, const UInt scan, UInt charge, const DoubleReal score, const DoubleReal intens, const DoubleReal rt, const UInt MZ_begin, const UInt MZ_end) | IsotopeWaveletTransform | [inline, protected, virtual] |
push2TmpBox_(const DoubleReal mz, const UInt scan, UInt charge, const DoubleReal score, const DoubleReal intens, const DoubleReal rt, const UInt MZ_begin, const UInt MZ_end) | IsotopeWaveletTransform | [inline, protected, virtual] |
sampleTheWavelet_(const MSSpectrum< PeakType > &scan, const UInt wavelet_length, const UInt mz_index, const DoubleReal offset, const UInt charge, const UInt peak_cutoff, const Int mode=+1) | IsotopeWaveletTransform | [inline, protected] |
scoreThis_(const MSSpectrum< PeakType > &candidate, const UInt peak_cutoff, const DoubleReal seed_mz, const UInt c, const DoubleReal intens, const DoubleReal ampl_cutoff=0) | IsotopeWaveletTransform | [inline, protected, virtual] |
spline_ | IsotopeWaveletTransform | [protected] |
tmp_boxes_ | IsotopeWaveletTransform | [protected] |
updateBoxStates(const UInt scan_index, const UInt RT_interleave, const UInt RT_votes_cutoff) | IsotopeWaveletTransform | [inline] |
xs_ | IsotopeWaveletTransform | [protected] |
~IsotopeWaveletTransform() | IsotopeWaveletTransform | [inline, virtual] |