00001 // -*- Mode: C++; tab-width: 2; -*- 00002 // vi: set ts=2: 00003 // 00004 // -------------------------------------------------------------------------- 00005 // OpenMS Mass Spectrometry Framework 00006 // -------------------------------------------------------------------------- 00007 // Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert 00008 // 00009 // This library is free software; you can redistribute it and/or 00010 // modify it under the terms of the GNU Lesser General Public 00011 // License as published by the Free Software Foundation; either 00012 // version 2.1 of the License, or (at your option) any later version. 00013 // 00014 // This library is distributed in the hope that it will be useful, 00015 // but WITHOUT ANY WARRANTY; without even the implied warranty of 00016 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU 00017 // Lesser General Public License for more details. 00018 // 00019 // You should have received a copy of the GNU Lesser General Public 00020 // License along with this library; if not, write to the Free Software 00021 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00022 // 00023 // -------------------------------------------------------------------------- 00024 // $Maintainer: Marcel Grunert $ 00025 // -------------------------------------------------------------------------- 00026 00027 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_FITTER1D_H 00028 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_FITTER1D_H 00029 00030 #include <OpenMS/DATASTRUCTURES/IsotopeCluster.h> 00031 #include <OpenMS/CONCEPT/FactoryProduct.h> 00032 #include <OpenMS/CONCEPT/Exception.h> 00033 #include <OpenMS/KERNEL/Feature.h> 00034 #include <OpenMS/MATH/STATISTICS/BasicStatistics.h> 00035 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderDefs.h> 00036 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h> 00037 00038 namespace OpenMS 00039 { 00048 class Fitter1D 00049 : public FactoryProduct, 00050 public FeatureFinderDefs 00051 { 00052 public: 00053 00055 typedef IsotopeCluster::IndexSet IndexSet; 00057 typedef IsotopeCluster::ChargedIndexSet ChargedIndexSet; 00059 typedef Feature::CoordinateType CoordinateType; 00061 typedef Feature::QualityType QualityType; 00063 typedef RawDataPoint1D RawDataPointType; 00065 typedef DPeakArray<RawDataPointType > RawDataArrayType; 00067 typedef RawDataArrayType::iterator RawDataPointIterator; 00068 00070 Fitter1D(); 00071 00073 Fitter1D(const Fitter1D& source); 00074 00076 virtual ~Fitter1D(); 00077 00079 virtual Fitter1D& operator = (const Fitter1D& source); 00080 00082 virtual QualityType fit1d(const RawDataArrayType& range, InterpolationModel*& model)=0; 00083 00085 static void registerChildren(); 00086 00087 protected: 00088 00090 CoordinateType tolerance_stdev_box_; 00092 CoordinateType min_; 00094 CoordinateType max_; 00096 CoordinateType stdev1_; 00098 CoordinateType stdev2_; 00100 Math::BasicStatistics<> statistics_; 00102 CoordinateType interpolation_step_; 00103 00104 virtual void updateMembers_(); 00105 00106 }; 00107 } 00108 00109 #endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_FITTER1D_H
Generated Tue Apr 1 15:36:34 2008 -- using doxygen 1.5.4 | OpenMS / TOPP 1.1 |