#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h>
EmgFitter1D Parameters are explained on a separate page.
Public Member Functions | |
EmgFitter1D () | |
Default constructor. | |
EmgFitter1D (const EmgFitter1D &source) | |
copy constructor | |
virtual | ~EmgFitter1D () |
destructor | |
virtual EmgFitter1D & | operator= (const EmgFitter1D &source) |
assignment operator | |
QualityType | fit1d (const RawDataArrayType &range, InterpolationModel *&model) |
return interpolation model | |
Static Public Member Functions | |
static Fitter1D * | create () |
create new BiGaussModel object (function needed by Factory) | |
static const String | getProductName () |
name of the model (needed by Factory) | |
Protected Member Functions | |
void | setInitialParameters_ (const RawDataArrayType &set) |
Compute start parameter. | |
void | printState_ (Int iter, gsl_multifit_fdfsolver *s) |
void | updateMembers_ () |
This method is used to update extra member variables at the end of the setParam() method. | |
Static Protected Member Functions | |
static Int | residual_ (const gsl_vector *x, void *params, gsl_vector *f) |
Evaluation of the target function for nonlinear optimization. | |
static Int | jacobian_ (const gsl_vector *x, void *params, gsl_matrix *J) |
Compute the Jacobian matrix, where each row of the matrix corresponds to a point in the data. | |
static Int | evaluate_ (const gsl_vector *x, void *params, gsl_vector *f, gsl_matrix *J) |
Driver function for the evaluation of function and jacobian. | |
Protected Attributes | |
CoordinateType | height_ |
Parameter of emg - peak height. | |
CoordinateType | width_ |
Parameter of emg - peak width. | |
CoordinateType | symmetry_ |
Parameter of emg - peak symmetry. | |
CoordinateType | retention_ |
Parameter of emg - peak retention time. | |
Classes | |
struct | Data |
Helper struct (contains the size of an area and a raw data container). More... |
EmgFitter1D | ( | ) |
Default constructor.
EmgFitter1D | ( | const EmgFitter1D & | source | ) |
copy constructor
virtual ~EmgFitter1D | ( | ) | [virtual] |
destructor
virtual EmgFitter1D& operator= | ( | const EmgFitter1D & | source | ) | [virtual] |
assignment operator
static Fitter1D* create | ( | ) | [inline, static] |
create new BiGaussModel object (function needed by Factory)
QualityType fit1d | ( | const RawDataArrayType & | range, | |
InterpolationModel *& | model | |||
) | [virtual] |
void setInitialParameters_ | ( | const RawDataArrayType & | set | ) | [protected] |
Compute start parameter.
static Int residual_ | ( | const gsl_vector * | x, | |
void * | params, | |||
gsl_vector * | f | |||
) | [static, protected] |
Evaluation of the target function for nonlinear optimization.
static Int jacobian_ | ( | const gsl_vector * | x, | |
void * | params, | |||
gsl_matrix * | J | |||
) | [static, protected] |
Compute the Jacobian matrix, where each row of the matrix corresponds to a point in the data.
static Int evaluate_ | ( | const gsl_vector * | x, | |
void * | params, | |||
gsl_vector * | f, | |||
gsl_matrix * | J | |||
) | [static, protected] |
Driver function for the evaluation of function and jacobian.
void printState_ | ( | Int | iter, | |
gsl_multifit_fdfsolver * | s | |||
) | [protected, virtual] |
Diplay the intermediate state of the solution. The solver state contains the vector s->x which is the current position, and the vector s->f with corresponding function values
Implements LevMarqFitter1D.
void updateMembers_ | ( | ) | [protected, virtual] |
This method is used to update extra member variables at the end of the setParam() method.
Also call it at the end of the derived classes' copy constructor and assignment operator.
The default implementation is empty.
Reimplemented from LevMarqFitter1D.
CoordinateType height_ [protected] |
Parameter of emg - peak height.
CoordinateType width_ [protected] |
Parameter of emg - peak width.
CoordinateType symmetry_ [protected] |
Parameter of emg - peak symmetry.
CoordinateType retention_ [protected] |
Parameter of emg - peak retention time.
Generated Tue Apr 1 15:36:47 2008 -- using doxygen 1.5.4 | OpenMS / TOPP 1.1 |