#include <OpenMS/METADATA/Modification.h>
Representation of some kind of modification. It hold information about what amino acids are modified and how much the mass changes.
Public Types | |
enum | SpecificityType { AA, AA_AT_CTERM, AA_AT_NTERM, CTERM, NTERM, SIZE_OF_SPECIFICITYTYPE } |
specificity of the reagent. More... | |
Public Member Functions | |
Modification () | |
default constructor | |
Modification (const Modification &) | |
copy constructor | |
virtual | ~Modification () |
destructor | |
Modification & | operator= (const Modification &) |
assignment operator | |
virtual bool | operator== (const SampleTreatment &rhs) const |
Equality operator. | |
virtual SampleTreatment * | clone () const |
clone method. See SampleTreatment | |
const String & | getReagentName () const |
returns the name of the reagent that was used (default: "") | |
void | setReagentName (const String &reagent_name) |
sets the name of the reagent that was used | |
float | getMass () const |
returns the mass change (default: 0.0) | |
void | setMass (float mass) |
sets the mass change | |
const SpecificityType & | getSpecificityType () const |
returns the specificity of the the reagent (default: AA) | |
void | setSpecificityType (const SpecificityType &specificity_type) |
sets the specificity of the the reagent | |
const String & | getAffectedAminoAcids () const |
returns a string containing the one letter code of the amino acids that are affected by the reagent. (default: "") | |
void | setAffectedAminoAcids (const String &affected_amino_acids) |
returns a string containing the one letter code of the amino acids that are affected by the reagent. Do not separate them by space, tab or comma! | |
Static Public Attributes | |
static const std::string | NamesOfSpecificityType [SIZE_OF_SPECIFICITYTYPE] |
Names of specifitiy types. | |
Protected Attributes | |
String | reagent_name_ |
float | mass_ |
SpecificityType | specificity_type_ |
String | affected_amino_acids_ |
enum SpecificityType |
specificity of the reagent.
Modification | ( | ) |
default constructor
Modification | ( | const Modification & | ) |
copy constructor
virtual ~Modification | ( | ) | [virtual] |
destructor
Modification& operator= | ( | const Modification & | ) |
assignment operator
virtual bool operator== | ( | const SampleTreatment & | rhs | ) | const [virtual] |
Equality operator.
Although this operator takes a reference to a SampleTreatment as argument it tests for the equality of Tagging instances!
Reimplemented from SampleTreatment.
Reimplemented in Tagging.
virtual SampleTreatment* clone | ( | ) | const [virtual] |
const String& getReagentName | ( | ) | const |
returns the name of the reagent that was used (default: "")
void setReagentName | ( | const String & | reagent_name | ) |
sets the name of the reagent that was used
float getMass | ( | ) | const |
returns the mass change (default: 0.0)
void setMass | ( | float | mass | ) |
sets the mass change
const SpecificityType& getSpecificityType | ( | ) | const |
returns the specificity of the the reagent (default: AA)
void setSpecificityType | ( | const SpecificityType & | specificity_type | ) |
sets the specificity of the the reagent
const String& getAffectedAminoAcids | ( | ) | const |
returns a string containing the one letter code of the amino acids that are affected by the reagent. (default: "")
void setAffectedAminoAcids | ( | const String & | affected_amino_acids | ) |
returns a string containing the one letter code of the amino acids that are affected by the reagent. Do not separate them by space, tab or comma!
const std::string NamesOfSpecificityType[SIZE_OF_SPECIFICITYTYPE] [static] |
Names of specifitiy types.
String reagent_name_ [protected] |
float mass_ [protected] |
SpecificityType specificity_type_ [protected] |
String affected_amino_acids_ [protected] |
Generated Tue Apr 1 15:36:46 2008 -- using doxygen 1.5.4 | OpenMS / TOPP 1.1 |