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PTMXMLHandler.h (Maintainer: Martin Langwisch)

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00001 // -*- Mode: C++; tab-width: 2; -*-
00002 // vi: set ts=2:
00003 //
00004 // --------------------------------------------------------------------------
00005 //                   OpenMS Mass Spectrometry Framework
00006 // --------------------------------------------------------------------------
00007 //  Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert
00008 //
00009 //  This library is free software; you can redistribute it and/or
00010 //  modify it under the terms of the GNU Lesser General Public
00011 //  License as published by the Free Software Foundation; either
00012 //  version 2.1 of the License, or (at your option) any later version.
00013 // 
00014 //  This library is distributed in the hope that it will be useful,
00015 //  but WITHOUT ANY WARRANTY; without even the implied warranty of
00016 //  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
00017 //  Lesser General Public License for more details.
00018 //
00019 //  You should have received a copy of the GNU Lesser General Public
00020 //  License along with this library; if not, write to the Free Software
00021 //  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
00022 //
00023 // --------------------------------------------------------------------------
00024 // $Maintainer: Martin Langwisch $
00025 // --------------------------------------------------------------------------
00026 
00027 #ifndef OPENMS_FORMAT_HANDLERS_PTMXMLHANDLER_H
00028 #define OPENMS_FORMAT_HANDLERS_PTMXMLHANDLER_H
00029 
00030 #include <OpenMS/FORMAT/HANDLERS/XMLHandler.h>
00031 #include <OpenMS/METADATA/ProteinIdentification.h>
00032 
00033 #include <vector>
00034 #include <map>
00035 #include <fstream>
00036 
00037 namespace OpenMS
00038 {
00039   namespace Internal
00040   {
00044     class PTMXMLHandler
00045       : public XMLHandler
00046     {
00047       public:
00049         PTMXMLHandler(std::map< String, std::pair< String, String > >& ptm_informations, const String& filename);
00050         
00052         virtual ~PTMXMLHandler();
00053         
00055         void writeTo(std::ostream& os);
00056         
00057         // Docu in base class
00058         virtual void endElement(const XMLCh* const /*uri*/, const XMLCh* const /*local_name*/, const XMLCh* const qname);
00059         
00060         // Docu in base class
00061         virtual void startElement(const XMLCh* const /*uri*/, const XMLCh* const /*local_name*/, const XMLCh* const qname, const xercesc::Attributes& attributes);
00062         
00063         // Docu in base class
00064         virtual void characters(const XMLCh* const chars, unsigned int /*length*/);
00065         
00066       protected:
00067         std::map< String, std::pair< String, String > >& ptm_informations_;
00068         String name_, tag_, composition_;
00069         bool open_tag_;
00070     };
00071     
00072   } // namespace Internal
00073   
00074 } // namespace OpenMS
00075 
00076 #endif // OPENMS_FORMAT_HANDLERS_PTMXMLHANDLER_H

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