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00027 #ifndef OPENMS_FORMAT_IDXMLFILE_H
00028 #define OPENMS_FORMAT_IDXMLFILE_H
00029
00030 #include <OpenMS/METADATA/ProteinIdentification.h>
00031 #include <OpenMS/METADATA/PeptideIdentification.h>
00032 #include <OpenMS/FORMAT/HANDLERS/XMLHandler.h>
00033 #include <OpenMS/FORMAT/XMLFile.h>
00034
00035 #include <vector>
00036
00037 namespace OpenMS
00038 {
00055 class IdXMLFile
00056 : protected Internal::XMLHandler,
00057 public Internal::XMLFile
00058 {
00059 public:
00060
00062 IdXMLFile();
00063
00070 void load(const String& filename, std::vector<ProteinIdentification>& protein_ids, std::vector<PeptideIdentification>& peptide_ids) throw (Exception::FileNotFound, Exception::ParseError);
00071
00077 void store(String filename, const std::vector<ProteinIdentification>& protein_ids, const std::vector<PeptideIdentification>& peptide_ids) throw (Exception::UnableToCreateFile);
00078
00079 protected:
00080
00081 virtual void endElement(const XMLCh* const , const XMLCh* const , const XMLCh* const qname);
00082
00083
00084 virtual void startElement(const XMLCh* const , const XMLCh* const , const XMLCh* const qname, const xercesc::Attributes& attributes);
00085
00087
00088
00089 std::vector<ProteinIdentification>* prot_ids_;
00091 std::vector<PeptideIdentification>* pep_ids_;
00093 MetaInfoInterface* last_meta_;
00095 std::map<String,ProteinIdentification::SearchParameters> parameters_;
00097 ProteinIdentification::SearchParameters param_;
00099 String id_;
00101 ProteinIdentification prot_id_;
00103 PeptideIdentification pep_id_;
00105 ProteinHit prot_hit_;
00107 PeptideHit pep_hit_;
00109 std::map<String,String> proteinid_to_accession_;
00110
00112 };
00113
00114 }
00115
00116 #endif // OPENMS_FORMAT_IDXMLFILE_H