00001 // -*- Mode: C++; tab-width: 2; -*- 00002 // vi: set ts=2: 00003 // 00004 // -------------------------------------------------------------------------- 00005 // OpenMS Mass Spectrometry Framework 00006 // -------------------------------------------------------------------------- 00007 // Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert 00008 // 00009 // This library is free software; you can redistribute it and/or 00010 // modify it under the terms of the GNU Lesser General Public 00011 // License as published by the Free Software Foundation; either 00012 // version 2.1 of the License, or (at your option) any later version. 00013 // 00014 // This library is distributed in the hope that it will be useful, 00015 // but WITHOUT ANY WARRANTY; without even the implied warranty of 00016 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU 00017 // Lesser General Public License for more details. 00018 // 00019 // You should have received a copy of the GNU Lesser General Public 00020 // License along with this library; if not, write to the Free Software 00021 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00022 // 00023 // -------------------------------------------------------------------------- 00024 // $Maintainer: Clemens Groepl $ 00025 // -------------------------------------------------------------------------- 00026 00027 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_FEATUREFINDERALGORITHM_H 00028 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_FEATUREFINDERALGORITHM_H 00029 00030 #include <OpenMS/CONCEPT/FactoryProduct.h> 00031 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h> 00032 00033 namespace OpenMS 00034 { 00035 00036 // forward declaration 00037 class FeatureFinder; 00038 00044 template<class PeakType, class FeatureType> class FeatureFinderAlgorithm : 00045 public FactoryProduct 00046 { 00047 public: 00049 typedef MSExperiment<PeakType> MapType; 00051 typedef typename MapType::CoordinateType CoordinateType; 00053 typedef typename MapType::IntensityType IntensityType; 00055 typedef FeatureMap<FeatureType> FeatureMapType; 00056 00058 FeatureFinderAlgorithm() : 00059 FactoryProduct("FeatureFinderAlgorithm"), 00060 map_(0), 00061 features_(0), 00062 ff_(0) 00063 { 00064 } 00065 00067 virtual ~FeatureFinderAlgorithm() 00068 { 00069 } 00070 00072 static void registerChildren(); 00073 00075 virtual void run()=0; 00076 00082 virtual Param getDefaultParameters() const 00083 { 00084 return this->defaults_; 00085 } 00086 00088 void setData(const MapType& map, FeatureMapType& features, FeatureFinder& ff) 00089 { 00090 map_ = ↦ 00091 features_ = &features; 00092 ff_ = &ff; 00093 } 00094 00095 protected: 00096 00098 const MapType* map_; 00099 00101 FeatureMapType* features_; 00102 00104 FeatureFinder* ff_; 00105 00106 private: 00107 00109 FeatureFinderAlgorithm& operator=(const FeatureFinderAlgorithm&); 00110 00112 FeatureFinderAlgorithm(const FeatureFinderAlgorithm&); 00113 00114 }; 00115 } 00116 00117 #endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_FEATUREFINDERALGORITHM_H
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