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Here is a list of all class members with links to the classes they belong to:
- c -
C :
ExtendedIsotopeModel
,
IsotopeModel
,
LmaIsotopeModel
c :
IsotopeWaveletTransform::BoxElement_
C :
LmaIsotopeFitter1D
c_ :
TOFCalibration
c_mzs_ :
IsotopeWaveletTransform
c_spacings_ :
IsotopeWaveletTransform
c_strings_ :
StringManager
CAD :
IonSource
calcChargeStateIntensities_() :
ProtonDistributionModel
calcGDilatation_() :
MorphFilter
calcGErosion_() :
MorphFilter
calcGridLines() :
AxisTickCalculator
calcHDilatation_() :
MorphFilter
calcHErosion_() :
MorphFilter
calcLogGridLines() :
AxisTickCalculator
calculateCalibCoeffs_() :
TOFCalibration
calculateGaussTable() :
SVMWrapper
calculateGridLines_() :
Spectrum3DOpenGLCanvas
calculateProtonDistribution_() :
ProtonDistributionModel
CALHIST :
ANDIHandler
calib_masses_ :
TOFCalibration
calib_peaks_ft_ :
TOFCalibration
calibrate() :
InternalCalibration
,
TOFCalibration
calibrate_() :
InternalCalibration
calignment_ :
ConsensusXMLHandler
CALTIMES :
ANDIHandler
cancelbutton_ :
MSMetaDataExplorer
CANNOT_WRITE_OUTPUT_FILE :
TOPPBase
canvas() :
Spectrum1DWidget
,
Spectrum2DWidget
,
Spectrum3DWidget
,
SpectrumWidget
canvas_ :
LayerStatisticsDialog
,
SpectrumWidget
canvas_3d_ :
Spectrum3DOpenGLCanvas
capacity() :
DPeakConstReferenceArray
capacity_ :
HashMap
,
DPeakConstReferenceArray
center() :
DIntervalBase
centerOfBin() :
Histogram
centroid_position :
PeakPickerCWT::PeakArea_
cexp_ :
MzDataExpSettHandler
,
MzDataHandler
,
MzXMLHandler
cgrid_ :
GridHandler
changeLayerFlag() :
TOPPViewBase
changeLegendVisibility() :
SpectrumCanvas
,
SpectrumWidget
changeVisibility() :
SpectrumCanvas
changeVisibleArea_() :
Spectrum1DCanvas
,
Spectrum3DCanvas
,
SpectrumCanvas
CHANNELELECTRONMULTIPLIER :
IonDetector
char_rest_ :
MzXMLHandler
characters() :
MascotXMLHandler
,
MzDataExpSettHandler
,
MzDataHandler
,
MzXMLHandler
,
OMSSAXMLHandler
,
PTMXMLHandler
,
XMLHandler
,
ConsensusXMLHandler
,
FeaturePairsHandler
,
FeatureXMLHandler
,
GridHandler
CHARGE :
DataFilters
charge_ :
EmpiricalFormula
,
IsotopeCluster::ChargedIndexSet
,
PrecursorPeak
,
Feature
,
PickedPeak1D
,
PeptideHit
,
ExtendedIsotopeFitter1D
,
ExtendedIsotopeModel
,
IsotopeFitter1D
,
IsotopeModel
,
LmaIsotopeFitter1D
,
LmaIsotopeModel
,
ModelFitter
,
OptimizePeakDeconvolution
charge_deconvolution_ :
ProcessingMethod
ChargedIndexSet :
FeatureFinderDefs
,
Fitter1D
,
IsotopeCluster::ChargedIndexSet
ChargeDirected :
ProtonDistributionModel
ChargeRemote :
ProtonDistributionModel
charges :
ProteinIdentification::SearchParameters
charges_ :
MascotInfile
,
ProteinIdentificationVisualizer
ChargeType :
PrecursorPeak
,
Feature
,
ModelFitter
check_() :
DataFilterDialog
check_defaults_ :
DefaultParamHandler
checkDBVersion() :
DBAdapter
checkDefaults() :
Param
checkFWHM_() :
OptimizePeakDeconvolution
checkNeighbour_() :
SimpleExtender
checkParam_() :
TOPPBase
checkPosition_() :
IsotopeWaveletTransform
checkPreferences_() :
TOPPViewBase
checkSize() :
SaveImageDialog
chi_squared_ :
LinearRegression
chordTrapezoidRule_() :
IsotopeWaveletTransform
CHROMATOGRAPHY :
IonSource
CHYMOTRYPSIN :
ProteinIdentification
CI :
IonSource
CID :
IonSource
,
Precursor
CIon :
Residue
Circle_2 :
DelaunayPairFinder::GeometricTraits::Construct_center_2
clear() :
Param
,
SparseVector
,
DataFilters
,
StringManager
,
DPeakConstReferenceArray
,
DSpectrum
,
AveragePosition
,
BasicStatistics
,
MetaInfo
,
StopWatch
,
ParamEditor
,
IsotopeDistribution
,
PreciseTime
,
TimeStamp
,
ConvexHull2D
,
Date
,
DateTime
,
DIntervalBase
,
DPosition
,
HashMap
,
Matrix
clear_() :
ElementDB
,
ResidueDB
,
BinnedRep
,
MetaInfoVisualizer
clearbutton_ :
MetaInfoVisualizer
clearChildIds_() :
PersistentObject
,
DPeakArray
,
MSExperiment
,
MSSpectrum
clearEluents() :
Gradient
clearId() :
PersistentObject
clearMetaInfo() :
MetaInfoInterface
clearMSLevels() :
PeakFileOptions
clearPercentages() :
Gradient
clearRanges() :
RangeManager
clearResidueModifications_() :
ResidueDB
clearResidues_() :
ResidueDB
clearTimepoints() :
Gradient
cleavage_ :
MascotInfile
clone() :
Digestion
,
Modification
,
SampleTreatment
,
Tagging
closebutton_ :
MSMetaDataExplorer
closeByTab() :
TOPPViewBase
closed_boxes_ :
IsotopeWaveletTransform
closeEvent() :
INIFileEditorWindow
,
TOPPViewBase
closeFile() :
TOPPViewBase
closeSwapFileHandle() :
File
ClusterIdxType :
HierarchicalClustering
ClusterIdxVectorType :
HierarchicalClustering
clustermap_ :
HierarchicalClustering
ClusterPointType :
FeatureDecharger
,
HierarchicalClustering
clusterSeeds_() :
IsotopeWaveletTransform
cmap_ :
FeatureXMLHandler
CMD :
ProgressLogger
cmp1_ :
LexicographicComparator
cmp2_ :
LexicographicComparator
cmp_ :
PointerComparator
,
ReverseComparator
coeff_quad_fit_ :
TOFCalibration
coeffs_ :
SmoothFilter
colIndex() :
Matrix
color() :
MultiGradient
color_ :
ColorSelector
ColorSelector() :
ColorSelector
cols() :
Matrix
cols_ :
Matrix
column_ :
HPLC
comment_ :
ExperimentalSettings
,
HPLC
,
MetaInfoDescription
,
Sample
,
SampleTreatment
,
Software
,
SpectrumSettings
compare_files() :
FuzzyStringComparator
compare_lines_() :
FuzzyStringComparator
compare_streams() :
FuzzyStringComparator
compare_strings() :
FuzzyStringComparator
comparepeaks_() :
SpectrumCheapDPCorr
ComplementFilter() :
ComplementFilter
ComplementMarker() :
ComplementMarker
COMPLETE_LINKAGE :
HierarchicalClustering
completion_time_ :
Software
composition_ :
PTMXMLHandler
compressTrieDB() :
InspectOutfile
compute() :
FeatureDecharger
,
HierarchicalClustering
computeConsensus_() :
ConsensusFeature
,
ConsensusPeak
computeConsensusMap() :
DelaunayPairFinder
computeElementBuckets_() :
PoseClusteringShiftSuperimposer
computeFeatureStats_() :
LayerStatisticsDialog
computeGoodness_() :
LinearRegression
computeGridCellIndex_() :
BasePairFinder
computeInterceptXAxis() :
LinearRegression
computeInterceptXAxisWeighted() :
LinearRegression
computeIsotopeDistributionSize_() :
IsotopeWavelet
computeKernelMatrix() :
SVMWrapper
computeMatching_() :
PoseClusteringPairwiseMapMatcher
computeMetaAverages_() :
LayerStatisticsDialog
computePeakPriority_() :
SimpleExtender
computePeakStats_() :
LayerStatisticsDialog
computeSelection() :
Spectrum3DOpenGLCanvas
computeShift_() :
PoseClusteringShiftSuperimposer
computeShiftBuckets_() :
PoseClusteringShiftSuperimposer
computeSTN_() :
SignalToNoiseEstimator
,
SignalToNoiseEstimatorMeanIterative
,
SignalToNoiseEstimatorMedian
concentration_ :
Sample
connect() :
DBConnection
connectVisualizer_() :
MSMetaDataExplorer
consensus_element_range_ :
ConsensusXMLHandler
consensus_map_ :
ConsensusXMLHandler
consensus_map_flag_ :
ConsensusXMLHandler
ConsensusElementIterator :
ConsensusMap
ConsensusElementPairVectorType :
StarAlignment
ConsensusElementType :
BaseAlignment
,
StarAlignment
,
ConsensusXMLHandler
,
ConsensusMap
ConsensusFeature() :
ConsensusFeature
ConsensusID() :
ConsensusID
ConsensusMap() :
ConsensusMap
ConsensusPeak() :
ConsensusPeak
ConsensusVectorType :
BaseAlignment
,
StarAlignment
CONSENSUSXML :
FileHandler
ConsensusXMLFile() :
ConsensusXMLFile
ConsensusXMLHandler() :
ConsensusXMLHandler
const_iterator :
Group
,
Grid
,
AASequence
,
EmpiricalFormula
,
IsotopeDistribution
,
BinnedRep
,
DPosition
,
HashMap
,
Matrix
,
DPeakConstReferenceArray
,
DSpectrum
,
SparseVector
const_modifications_ :
ResidueDB
const_pointer :
ExternalAllocator
,
Grid
const_reference :
Grid
,
Group
,
Matrix
,
DPeakConstReferenceArray
,
DSpectrum
,
ExternalAllocator
,
HashMap
const_residues_ :
ResidueDB
const_reverse_iterator :
Grid
,
Group
,
Matrix
,
DPeakConstReferenceArray
,
DSpectrum
,
HashMap
const_weights_ :
SequestOutfile
CONSTANT :
MassAnalyzer
CONSTANTNEUTRALLOSS :
MassAnalyzer
ConstAreaIterator :
MSExperiment
ConstIterator :
AASequence
,
EmpiricalFormula
,
IsotopeDistribution
,
BinnedRep
,
DPosition
,
HashMap::Iterator
,
Matrix
,
String
,
TextFile
,
ConsensusMap
,
DPeakConstReferenceArray
,
DSpectrum
,
FeatureMap
,
Histogram
,
HashMap::ConstIterator
,
MSExperiment
,
SparseVector
,
DPeakArray
,
Grid
ConstPeakReference :
MSExperiment
ConstReference :
Grid
,
Matrix
,
FeatureMap
ConstReverseIterator :
Grid
,
HashMap
,
Matrix
,
TextFile
,
ConsensusMap
,
DPeakArray
,
DSpectrum
,
FeatureMap
,
DPeakConstReferenceArray
,
String
construct() :
ExternalAllocator
CONTACT :
ANDIHandler
contact_info_ :
ContactPerson
ContactPerson() :
ContactPerson
ContactPersonVisualizer() :
ContactPersonVisualizer
contacts_ :
ExperimentalSettings
container_ :
DSpectrum
container_type :
Matrix
,
LinearInterpolation
,
BilinearInterpolation
ContainerType :
IsotopeDistribution
,
Matrix
,
DSpectrum
,
BilinearInterpolation
,
LinearInterpolation
,
InterpolationModel
,
LmaIsotopeFitter1D::Data
,
LevMarqFitter1D
contains() :
StringList
containsMSLevel() :
PeakFileOptions
contextMenuEvent() :
Spectrum3DCanvas
,
Spectrum1DCanvas
,
Spectrum2DCanvas
,
EnhancedTabBar
CONTINUOUSFLOWFASTATOMBOMBARDMENT :
IonSource
ContinuousWaveletTransform() :
ContinuousWaveletTransform
ContinuousWaveletTransformNumIntegration() :
ContinuousWaveletTransformNumIntegration
CONVERSIONDYNODEELECTRONMULTIPLIER :
IonDetector
CONVERSIONDYNODEPHOTOMULTIPLIER :
IonDetector
ConversionError() :
ConversionError
convert() :
StringManager
convex_hull_ :
Feature
convex_hulls_ :
Feature
convex_hulls_modified_ :
Feature
ConvexHull2D() :
ConvexHull2D
convolve_() :
IsotopeDistribution
convolvePow_() :
IsotopeDistribution
convolveSquare_() :
IsotopeDistribution
coordinate_ :
DPosition
coordinate_container :
BasicStatistics
CoordinateType :
InterpolationModel
,
Fitter1D
,
LmaIsotopeModel
,
LmaGaussModel
,
FeatureFinderAlgorithmPicked
,
FeatureFinderAlgorithm
,
PoseClusteringShiftSuperimposer
,
PoseClusteringPairwiseMapMatcher
,
DPosition
,
DPeak
,
GridCell
,
PoseClusteringAffineSuperimposer
,
DBoundingBox
,
AreaIterator
,
DRawDataPoint
,
MSExperiment
,
BaseModel
,
BiGaussModel
,
EmgModel
,
FeaFiModule
,
GaussModel
,
RawDataPoint2D
,
IsotopeModel
,
LmaIsotopeFitter1D::Data
,
DIntervalBase
,
ModelFitter
,
SimpleExtender
,
DRange
,
DSpectrum
,
BasePairwiseMapMatcher
,
AveragePosition
,
ExtendedIsotopeModel
,
RawDataPoint1D
copy() :
Param
corner_ :
Spectrum3DOpenGLCanvas
correlate_() :
OptimizePick
,
PeakPickerCWT
corresponding_protein_accessions_ :
PeptideHit
count() :
Group
,
LayerStatisticsDialog::MetaStatsValue_
count_ :
BigString
counter_ :
ModelFitter
countTreatments() :
Sample
cp_contact_info_ :
ContactPersonVisualizer
cp_email_ :
ContactPersonVisualizer
cp_firstname_ :
ContactPersonVisualizer
cp_institution_ :
ContactPersonVisualizer
cp_lastname_ :
ContactPersonVisualizer
cpairs_ :
FeaturePairsHandler
cpu_speed_ :
StopWatch
create() :
NeutralLossMarker
,
PoseClusteringShiftSuperimposer
,
WindowMower
,
ComplementMarker
,
SqrtMower
,
IsotopeFitter1D
,
DelaunayPairFinder
,
ExtendedIsotopeFitter1D
,
FastaIterator
,
Scaler
,
ThresholdMower
,
BinnedRepSumAgreeingIntensities
,
Factory
,
EmgFitter1D
,
NeutralLossDiffFilter
,
BinnedRepSharedPeakCount
,
LmaIsotopeFitter1D
,
FeatureFinderAlgorithmPicked
,
GaussFitter1D
,
Normalizer
,
BinnedRepMutualInformation
,
MarkerMower
,
NLargest
,
ZhangSimilarityScore
,
BiGaussModel
,
LmaGaussModel
,
SimplePairFinder
,
SpectrumAlignmentScore
,
EdwardsLippertIteratorTryptic
,
StringList
,
SpectrumPrecursorComparator
,
LmaGaussFitter1D
,
EdwardsLippertIterator
,
LmaIsotopeModel
,
BinnedRepSpectrumContrastAngle
,
FeatureFinderAlgorithmSimple
,
BiGaussFitter1D
,
EmgModel
,
ProductModel
,
IsotopeModel
,
PeakDensityFilter
,
IsotopeDiffFilter
,
SpectrumCheapDPCorr
,
ExtendedIsotopeModel
,
IsotopeMarker
,
BernNorm
,
ParentFilter
,
GaussModel
,
FastaIteratorIntern
,
IntensityBalanceFilter
,
ParentPeakMower
,
TrypticIterator
,
PoseClusteringPairwiseMapMatcher
,
TICFilter
,
FeatureFinderAlgorithmSimplest
,
ComplementFilter
,
PoseClusteringAffineSuperimposer
,
GoodDiffFilter
createDB() :
DBAdapter
createEditor() :
ParamEditorDelegate
createIfNotExists_() :
MetaInfoInterface
createIntensityDistribution_() :
Spectrum1DWidget
,
SpectrumWidget
,
Spectrum2DWidget
,
Spectrum3DWidget
createModel() :
ModelDescription
createRandomPartitions() :
SVMWrapper
createSparseFile() :
File
CTERM :
Modification
CTerminal :
Residue
curr_region_ :
TwoDOptimization
current_ :
Param::ParamIterator
current_chull_ :
FeatureXMLHandler
,
FeaturePairsHandler
current_layer_ :
SpectrumCanvas
current_peak_ :
SimpleSeeder
,
AreaIterator
current_scan_ :
AreaIterator
current_secs_ :
StopWatch
current_system_time_ :
StopWatch
current_usecs_ :
StopWatch
current_user_time_ :
StopWatch
currentLayerParamtersChanged_() :
Spectrum1DCanvas
,
Spectrum2DCanvas
,
Spectrum3DCanvas
,
SpectrumCanvas
currentPeakData_() :
SpectrumCanvas
curve() :
ROCCurve
custom_res_db_ :
AASequence
customizations_ :
Instrument
cut_off_ :
BaseModel
cutoffNeg() :
ROCCurve
cutoffPos() :
ROCCurve
cv_terms_ :
XMLHandler
cvParam_() :
MzDataHandler
,
MzDataExpSettHandler
cvStringToEnum_() :
XMLHandler
Generated Tue Apr 1 15:36:41 2008 -- using doxygen 1.5.4
OpenMS / TOPP 1.1