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FeatureFinderAlgorithmPicked Member List

This is the complete list of members for FeatureFinderAlgorithmPicked, including all inherited members.

abort_(const String &reason)FeatureFinderAlgorithmPicked [inline, protected]
aborts_FeatureFinderAlgorithmPicked [protected]
ChargedIndexSet typedefFeatureFinderDefs
check_defaults_DefaultParamHandler [protected]
CoordinateType typedefFeatureFinderAlgorithmPicked
create()FeatureFinderAlgorithmPicked [inline, static]
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandler [protected]
defaultsToParam_()DefaultParamHandler [protected]
error_name_DefaultParamHandler [protected]
extendMassTrace_(MassTrace &trace, Int spectrum_index, DoubleReal mz, bool inc_rt, DoubleReal min_rt=0.0, DoubleReal max_rt=0.0)FeatureFinderAlgorithmPicked [inline, protected]
extendMassTraces_(const IsotopePattern &pattern, MassTraces &traces)FeatureFinderAlgorithmPicked [inline, protected]
FactoryProduct(const String &name)FactoryProduct
FactoryProduct(const FactoryProduct &source)FactoryProduct
FeatureFinderAlgorithm()FeatureFinderAlgorithm [inline]
FeatureFinderAlgorithmPicked()FeatureFinderAlgorithmPicked [inline]
FeatureFinderAlgorithmPicked(const FeatureFinderAlgorithmPicked &)FeatureFinderAlgorithmPicked [private]
FeatureMapType typedefFeatureFinderAlgorithm
features_FeatureFinderAlgorithm [protected]
ff_FeatureFinderAlgorithm [protected]
findBestIsotopeFit_(const Seed &center, UInt charge, IsotopePattern &best_pattern)FeatureFinderAlgorithmPicked [inline, protected]
findIsotope_(CoordinateType pos, UInt spectrum_index, IsotopePattern &pattern, UInt pattern_index, bool debug, UInt &peak_index)FeatureFinderAlgorithmPicked [inline, protected]
Flag enum nameFeatureFinderDefs
gaussDF_(const gsl_vector *param, void *data, gsl_matrix *J)FeatureFinderAlgorithmPicked [inline, protected, static]
gaussF_(const gsl_vector *param, void *data, gsl_vector *f)FeatureFinderAlgorithmPicked [inline, protected, static]
gaussFDF_(const gsl_vector *param, void *data, gsl_vector *f, gsl_matrix *J)FeatureFinderAlgorithmPicked [inline, protected, static]
getDefaultParameters() const FeatureFinderAlgorithm [inline, virtual]
getDefaults() const DefaultParamHandler
getIsotopeDistribution_(DoubleReal mass)FeatureFinderAlgorithmPicked [inline, protected]
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getProductName()FeatureFinderAlgorithmPicked [inline, static]
getSubsections() const DefaultParamHandler
IndexPair typedefFeatureFinderDefs
IndexSet typedefFeatureFinderDefs
info_FeatureFinderAlgorithmPicked [protected]
intensity_bins_FeatureFinderAlgorithmPicked [protected]
intensity_mz_step_FeatureFinderAlgorithmPicked [protected]
intensity_percentage_FeatureFinderAlgorithmPicked [protected]
intensity_percentage_optional_FeatureFinderAlgorithmPicked [protected]
intensity_rt_step_FeatureFinderAlgorithmPicked [protected]
intensity_thresholds_FeatureFinderAlgorithmPicked [protected]
intensityScore_(DoubleReal intensity, UInt spectrum, UInt peak)FeatureFinderAlgorithmPicked [inline, protected]
intensityScore_(UInt rt_bin, UInt mz_bin, DoubleReal intensity)FeatureFinderAlgorithmPicked [inline, protected]
IntensityType typedefFeatureFinderAlgorithmPicked
intersection_(const Feature &f1, const Feature &f2)FeatureFinderAlgorithmPicked [inline, protected]
isotope_distributions_FeatureFinderAlgorithmPicked [protected]
isotopeScore_(const TheoreticalIsotopePattern &isotopes, IsotopePattern &pattern, bool consider_mz_distances, bool debug)FeatureFinderAlgorithmPicked [inline, protected]
log_FeatureFinderAlgorithmPicked [protected]
map_FeatureFinderAlgorithm [protected]
MapType typedefFeatureFinderAlgorithmPicked
mass_window_width_FeatureFinderAlgorithmPicked [protected]
max_missing_trace_peaks_FeatureFinderAlgorithmPicked [protected]
min_isotope_fit_FeatureFinderAlgorithmPicked [protected]
min_spectra_FeatureFinderAlgorithmPicked [protected]
min_trace_score_FeatureFinderAlgorithmPicked [protected]
nearest_(CoordinateType pos, const SpectrumType &spec, UInt start) const FeatureFinderAlgorithmPicked [inline, protected]
operator=(const FeatureFinderAlgorithmPicked &)FeatureFinderAlgorithmPicked [private]
OpenMS::FactoryProduct::operator=(const FactoryProduct &source)FactoryProduct [virtual]
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandler [virtual]
operator==(const FactoryProduct &rhs) const FactoryProduct [virtual]
OpenMS::DefaultParamHandler::operator==(const DefaultParamHandler &rhs) const DefaultParamHandler [virtual]
optional_fit_improvement_FeatureFinderAlgorithmPicked [protected]
param_DefaultParamHandler [protected]
pattern_tolerance_FeatureFinderAlgorithmPicked [protected]
positionScore_(CoordinateType pos1, CoordinateType pos2, DoubleReal allowed_deviation) const FeatureFinderAlgorithmPicked [inline, protected]
registerChildren()FeatureFinderAlgorithm [inline, static]
run()FeatureFinderAlgorithmPicked [inline, virtual]
setData(const MapType &map, FeatureMapType &features, FeatureFinder &ff)FeatureFinderAlgorithm [inline]
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
slope_bound_FeatureFinderAlgorithmPicked [protected]
SpectrumType typedefFeatureFinderAlgorithmPicked
subsections_DefaultParamHandler [protected]
trace_tolerance_FeatureFinderAlgorithmPicked [protected]
UNUSED enum valueFeatureFinderDefs
updateMembers_()FeatureFinderAlgorithmPicked [inline, protected, virtual]
USED enum valueFeatureFinderDefs
~DefaultParamHandler()DefaultParamHandler [virtual]
~FeatureFinderAlgorithm()FeatureFinderAlgorithm [inline, virtual]


Generated Tue Apr 1 15:36:47 2008 -- using doxygen 1.5.4 OpenMS / TOPP 1.1