Name | Type | Default | Restrictions | Description |
---|---|---|---|---|
algorithm | string | ranked | ranked, merge, average, probability | Algorithm used for the consensus scoring. merge -- merges the runs with respect to their score. The score is not modified. Make sure to use PeptideIdentifications with the same score type only! ranked -- reorders the hits according to a consensus score computed from the ranks in the input runs. The score is normalized to the interval (0,100). The PeptideIdentifications do not need to have the same score type. average -- reorders the hits according to the average score of the input runs. Make sure to use PeptideIdentifications with the same score type only! probability -- calculates a consensus probability by multiplying the probabilities for each peptide obtained from the individual search engines. Make sure to use PeptideIdentifications with score types converted to probabilites only! |
considered_hits | int | 10 | min: 1 | The number of top hits that are used for the consensus scoring. |
number_of_runs | int | 0 | min: 0 | The number of runs used as input. This information is used in 'Ranked' and 'Average' to compute the new scores. If not given, the number of input identifications is taken. |
min_number_of_engines | int | 2 | min: 2 | The minimum number of search engines used to generate peptide lists |
Note:
Generated Tue Apr 1 15:36:40 2008 -- using doxygen 1.5.4 | OpenMS / TOPP 1.1 |