The input of this application is an svm model and an IdXML file with peptide identifications. The svm model file is specified by the svm_model parameter in the command line or the ini file. This file should have been produced by the RTModel application.
For retention time prediction the peptide sequences are extracted from the IdXML inputfile and passed to the svm. The svm then predicts retention times according to the trained model. The predicted retention times are stored as
<userParam name="predicted_retention_time" value="<predicted retention time>" />
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