00001 // -*- Mode: C++; tab-width: 2; -*- 00002 // vi: set ts=2: 00003 // 00004 // -------------------------------------------------------------------------- 00005 // OpenMS Mass Spectrometry Framework 00006 // -------------------------------------------------------------------------- 00007 // Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert 00008 // 00009 // This library is free software; you can redistribute it and/or 00010 // modify it under the terms of the GNU Lesser General Public 00011 // License as published by the Free Software Foundation; either 00012 // version 2.1 of the License, or (at your option) any later version. 00013 // 00014 // This library is distributed in the hope that it will be useful, 00015 // but WITHOUT ANY WARRANTY; without even the implied warranty of 00016 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU 00017 // Lesser General Public License for more details. 00018 // 00019 // You should have received a copy of the GNU Lesser General Public 00020 // License along with this library; if not, write to the Free Software 00021 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00022 // 00023 // -------------------------------------------------------------------------- 00024 // $Maintainer: Marc Sturm $ 00025 // -------------------------------------------------------------------------- 00026 00027 #ifndef OPENMS_METADATA_EXPERIMENTALSETTINGS_H 00028 #define OPENMS_METADATA_EXPERIMENTALSETTINGS_H 00029 00030 #include <OpenMS/METADATA/Sample.h> 00031 #include <OpenMS/METADATA/Software.h> 00032 #include <OpenMS/METADATA/ProcessingMethod.h> 00033 #include <OpenMS/METADATA/MetaInfoInterface.h> 00034 #include <OpenMS/METADATA/HPLC.h> 00035 #include <OpenMS/METADATA/SourceFile.h> 00036 #include <OpenMS/METADATA/ContactPerson.h> 00037 #include <OpenMS/METADATA/Instrument.h> 00038 #include <OpenMS/METADATA/ProteinIdentification.h> 00039 #include <OpenMS/DATASTRUCTURES/Date.h> 00040 00041 #include <vector> 00042 00043 namespace OpenMS 00044 { 00053 class ExperimentalSettings 00054 : public MetaInfoInterface 00055 { 00056 public: 00058 enum ExperimentType 00059 { 00060 UNKNOWN, 00061 MS, 00062 MS_MS, 00063 HPLC_MS, 00064 HPLC_MS_MS, 00065 SIZE_OF_EXPERIMENTTYPE 00066 }; 00068 static const std::string NamesOfExperimentType[SIZE_OF_EXPERIMENTTYPE]; 00069 00071 ExperimentalSettings(); 00073 ExperimentalSettings(const ExperimentalSettings& source); 00075 ~ExperimentalSettings(); 00076 00078 ExperimentalSettings& operator= (const ExperimentalSettings& source); 00079 00081 bool operator== (const ExperimentalSettings& rhs) const; 00083 bool operator!= (const ExperimentalSettings& rhs) const; 00084 00086 const Sample& getSample() const; 00088 Sample& getSample(); 00090 void setSample(const Sample& sample); 00091 00093 const SourceFile& getSourceFile() const; 00095 SourceFile& getSourceFile(); 00097 void setSourceFile(const SourceFile& source_file); 00098 00100 const std::vector<ContactPerson>& getContacts() const; 00102 std::vector<ContactPerson>& getContacts(); 00104 void setContacts(const std::vector<ContactPerson>& contacts); 00105 00107 const Instrument& getInstrument() const; 00109 Instrument& getInstrument(); 00111 void setInstrument(const Instrument& instrument); 00112 00114 const Software& getSoftware() const; 00116 Software& getSoftware(); 00118 void setSoftware(const Software& software); 00119 00121 const ProcessingMethod& getProcessingMethod() const; 00123 ProcessingMethod& getProcessingMethod(); 00125 void setProcessingMethod(const ProcessingMethod& processing_method); 00126 00128 const HPLC& getHPLC() const; 00130 HPLC& getHPLC(); 00132 void setHPLC(const HPLC& hplc); 00133 00135 ExperimentType getType() const; 00137 void setType(ExperimentType type); 00138 00140 const Date& getDate() const; 00142 void setDate(const Date& date); 00143 00145 const String& getComment() const; 00147 void setComment(const String& comment); 00148 00150 const std::vector<ProteinIdentification>& getProteinIdentifications() const; 00152 std::vector<ProteinIdentification>& getProteinIdentifications(); 00154 void setProteinIdentifications(const std::vector<ProteinIdentification>& protein_identifications); 00156 void addProteinIdentification(ProteinIdentification& protein_identification); 00157 00158 protected: 00159 Sample sample_; 00160 SourceFile source_file_; 00161 std::vector<ContactPerson> contacts_; 00162 Instrument instrument_; 00163 Software software_; 00164 ProcessingMethod processing_method_; 00165 HPLC hplc_; 00166 ExperimentType type_; 00167 Date date_; 00168 String comment_; 00169 std::vector<ProteinIdentification> protein_identifications_; 00170 }; 00171 00173 std::ostream& operator << (std::ostream& os, const ExperimentalSettings& exp); 00174 00175 } // namespace OpenMS 00176 00177 #endif // OPENMS_METADATA_EXPERIMENTALSETTINGS_H
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