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ProteinHit.h (Maintainer: Nico Pfeifer)

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00001 // -*- Mode: C++; tab-width: 2; -*-
00002 // vi: set ts=2:
00003 //
00004 // --------------------------------------------------------------------------
00005 //                   OpenMS Mass Spectrometry Framework
00006 // --------------------------------------------------------------------------
00007 //  Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert
00008 //
00009 //  This library is free software; you can redistribute it and/or
00010 //  modify it under the terms of the GNU Lesser General Public
00011 //  License as published by the Free Software Foundation; either
00012 //  version 2.1 of the License, or (at your option) any later version.
00013 //
00014 //  This library is distributed in the hope that it will be useful,
00015 //  but WITHOUT ANY WARRANTY; without even the implied warranty of
00016 //  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
00017 //  Lesser General Public License for more details.
00018 //
00019 //  You should have received a copy of the GNU Lesser General Public
00020 //  License along with this library; if not, write to the Free Software
00021 //  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
00022 //
00023 // --------------------------------------------------------------------------
00024 // $Maintainer: Nico Pfeifer $
00025 // --------------------------------------------------------------------------
00026 
00027 #ifndef OPENMS_METADATA_PROTEINHIT_H
00028 #define OPENMS_METADATA_PROTEINHIT_H
00029 
00030 #include <vector>
00031 
00032 #include <OpenMS/CONCEPT/Types.h>
00033 #include <OpenMS/DATASTRUCTURES/String.h>
00034 #include <OpenMS/METADATA/MetaInfoInterface.h>
00035 
00036 namespace OpenMS
00037 {
00046   class ProteinHit
00047     : public MetaInfoInterface
00048   {
00049     public:
00050     
00053       
00055       ProteinHit();
00056       
00058       ProteinHit(DoubleReal score, UInt rank, String accession, String sequence);
00059   
00061       ProteinHit(const ProteinHit& source);
00062           
00064       virtual ~ProteinHit();
00066       
00068       ProteinHit& operator=(const ProteinHit& source);
00069       
00071       bool operator == (const ProteinHit& rhs) const;
00072       
00074       bool operator != (const ProteinHit& rhs) const;
00075   
00076   
00079       
00081       Real getScore() const;
00082       
00084       UInt getRank() const;
00085       
00087       const String& getSequence() const;
00088       
00090       const String& getAccession() const;
00091   
00093       void setScore(DoubleReal score);
00094       
00096       void setRank(UInt newrank);
00097       
00099       void setSequence(const String& sequence);
00100       
00102       void setAccession(const String& accession);
00104 
00105     protected:
00106       Real score_;          
00107       UInt rank_;           
00108       String accession_;    
00109       String sequence_;     
00110 
00111   };
00112 
00113 } // namespace OpenMS
00114 
00115 #endif // OPENMS_METADATA_PROTEINHIT_H

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