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EmgModel.h (Maintainer: Clemens Groepl, Marcel Grunert)

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00001 // -*- Mode: C++; tab-width: 2; -*-
00002 // vi: set ts=2:
00003 //
00004 // --------------------------------------------------------------------------
00005 //                   OpenMS Mass Spectrometry Framework
00006 // --------------------------------------------------------------------------
00007 //  Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert
00008 //
00009 //  This library is free software; you can redistribute it and/or
00010 //  modify it under the terms of the GNU Lesser General Public
00011 //  License as published by the Free Software Foundation; either
00012 //  version 2.1 of the License, or (at your option) any later version.
00013 //
00014 //  This library is distributed in the hope that it will be useful,
00015 //  but WITHOUT ANY WARRANTY; without even the implied warranty of
00016 //  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
00017 //  Lesser General Public License for more details.
00018 //
00019 //  You should have received a copy of the GNU Lesser General Public
00020 //  License along with this library; if not, write to the Free Software
00021 //  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
00022 //
00023 // --------------------------------------------------------------------------
00024 // $Maintainer: Clemens Groepl, Marcel Grunert $
00025 // --------------------------------------------------------------------------
00026 
00027 
00028 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_EMGMODEL_H
00029 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_EMGMODEL_H
00030 
00031 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h>
00032 #include <OpenMS/MATH/STATISTICS/BasicStatistics.h>
00033 
00034 
00035 namespace OpenMS
00036 {
00044   class EmgModel
00045     : public InterpolationModel
00046   {
00047 
00048    public:
00049     typedef InterpolationModel::CoordinateType CoordinateType;
00050     typedef Math::BasicStatistics<CoordinateType > BasicStatistics;
00051 
00053     EmgModel();
00054 
00056     EmgModel(const EmgModel& source);
00057 
00059     virtual ~EmgModel();
00060 
00062     virtual EmgModel& operator = (const EmgModel& source);
00063 
00065     static BaseModel<1>* create()
00066     {
00067       return new EmgModel();
00068     }
00069 
00071     static const String getProductName()
00072     {
00073       return "EmgModel";
00074     }
00075 
00077     void setOffset(CoordinateType offset);
00078 
00080     void setSamples();
00081 
00083     CoordinateType getCenter() const;
00084 
00085    protected:
00086     CoordinateType  min_;
00087     CoordinateType  max_;
00088     BasicStatistics statistics_;
00089     CoordinateType height_;
00090     CoordinateType width_;
00091     CoordinateType symmetry_;
00092     CoordinateType retention_;
00093     
00094     void updateMembers_();
00095   };
00096 }
00097 
00098 #endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_EMGMODEL_H

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