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FeatureFinderDefs.h (Maintainer: Clemens Groepl)

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00001 // -*- Mode: C++; tab-width: 2; -*-
00002 // vi: set ts=2:
00003 //
00004 // --------------------------------------------------------------------------
00005 //                   OpenMS Mass Spectrometry Framework
00006 // --------------------------------------------------------------------------
00007 //  Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert
00008 //
00009 //  This library is free software; you can redistribute it and/or
00010 //  modify it under the terms of the GNU Lesser General Public
00011 //  License as published by the Free Software Foundation; either
00012 //  version 2.1 of the License, or (at your option) any later version.
00013 //
00014 //  This library is distributed in the hope that it will be useful,
00015 //  but WITHOUT ANY WARRANTY; without even the implied warranty of
00016 //  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
00017 //  Lesser General Public License for more details.
00018 //
00019 //  You should have received a copy of the GNU Lesser General Public
00020 //  License along with this library; if not, write to the Free Software
00021 //  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
00022 //
00023 // --------------------------------------------------------------------------
00024 // $Maintainer: Clemens Groepl $
00025 // --------------------------------------------------------------------------
00026 
00027 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_FEATUREFINDERDEFS_H
00028 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_FEATUREFINDERDEFS_H
00029 
00030 #include <OpenMS/KERNEL/MSExperiment.h>
00031 #include <OpenMS/KERNEL/FeatureMap.h>
00032 
00033 #include <OpenMS/DATASTRUCTURES/IsotopeCluster.h>
00034 #include <OpenMS/CONCEPT/Exception.h>
00035 
00036 namespace OpenMS
00037 {
00038 
00039   // forward declaration
00040   class FeatureFinder;
00041   
00043   struct FeatureFinderDefs 
00044   { 
00046     typedef IsotopeCluster::IndexPair IndexPair;
00047     
00049     typedef IsotopeCluster::ChargedIndexSet ChargedIndexSet;
00050     
00052     typedef IsotopeCluster::IndexSet IndexSet;
00053     
00055     enum Flag { UNUSED, USED };
00056 
00058     class UnableToFit :
00059       public Exception::Base
00060     {
00061       public:
00062 
00063         UnableToFit(const char* file, int line, const char* function, const std::string& name , const std::string& message) :
00064           Base(file, line, function, name, message)
00065         {
00066         }
00067         virtual ~UnableToFit() throw()
00068         {
00069         }
00070     };
00071 
00073     class NoSuccessor :
00074       public Exception::Base
00075     {
00076       public:
00077         NoSuccessor(const char* file, int line, const char* function, const IndexPair& index) throw()
00078           : Base(file, line, function, "NoSuccessor", "no successor/predecessor"), 
00079           index_(index)
00080           {
00081             what_ = String("there is no successor/predecessor for the given Index: ") + index_.first + "/" + index_.second;
00082             Exception::globalHandler.setMessage(what_);
00083           }
00084         virtual ~NoSuccessor() throw()
00085         {
00086 
00087         }
00088       protected:
00089         IndexPair index_;  // index without successor/predecessor
00090     };
00091   };
00092 }
00093 #endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_FEATUREFINDERDEFS_H

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