addConvexHull(const FeatureFinderDefs::IndexSet &set, Feature &feature) const | FeaFiModule | [inline] |
algorithm_ | ModelFitter | [protected] |
Base typedef | ModelFitter | |
basic_stat_ | ModelFitter | [protected] |
charge_ | ModelFitter | [protected] |
ChargedIndexSet typedef | FeatureFinderDefs | |
ChargeType typedef | ModelFitter | |
check_defaults_ | DefaultParamHandler | [protected] |
CoordinateType typedef | ModelFitter | |
counter_ | ModelFitter | [protected] |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | [protected] |
defaultsToParam_() | DefaultParamHandler | [protected] |
deltaAbsError_ | ModelFitter | [protected] |
deltaRelError_ | ModelFitter | [protected] |
doProjectionDim_(const ChargedIndexSet &index_set, RawDataArrayType &set, Int dim, String algorithm) | ModelFitter | [inline, protected] |
error_name_ | DefaultParamHandler | [protected] |
evaluate_(const IndexSet &set, ProductModel< 2 > *&final, String algorithm) | ModelFitter | [inline, protected] |
FeaFiModule(const MSExperiment< PeakType > *map, FeatureMap< FeatureType > *features, FeatureFinder *ff) | FeaFiModule | [inline] |
FeatureMapType typedef | FeaFiModule | |
features_ | FeaFiModule | [protected] |
ff_ | FeaFiModule | [protected] |
first_mz_model_ | ModelFitter | [protected] |
fit(const ChargedIndexSet &index_set) | ModelFitter | [inline] |
fitDim_(Int dim, String algorithm) | ModelFitter | [inline, protected] |
fitLoop_(const ChargedIndexSet &set, Int &first_mz, Int &last_mz, ProductModel< 2 > *&final) | ModelFitter | [inline, protected] |
Flag enum name | FeatureFinderDefs | |
getDefaults() const | DefaultParamHandler | |
getName() const | DefaultParamHandler | |
getNextMz(FeatureFinderDefs::IndexPair &index) const | FeaFiModule | [inline] |
getNextRt(FeatureFinderDefs::IndexPair &index) | FeaFiModule | [inline] |
getParameters() const | DefaultParamHandler | |
getPeakIntensity(const FeatureFinderDefs::IndexPair &index) const | FeaFiModule | [inline] |
getPeakMz(const FeatureFinderDefs::IndexPair &index) const | FeaFiModule | [inline] |
getPeakRt(const FeatureFinderDefs::IndexPair &index) const | FeaFiModule | [inline] |
getPrevMz(FeatureFinderDefs::IndexPair &index) const | FeaFiModule | [inline] |
getPrevRt(FeatureFinderDefs::IndexPair &index) | FeaFiModule | [inline] |
getSubsections() const | DefaultParamHandler | |
IndexPair typedef | FeatureFinderDefs | |
IndexSet typedef | FeatureFinderDefs | |
IndexSetIter typedef | ModelFitter | |
IntensityType typedef | ModelFitter | |
interpolation_step_mz_ | ModelFitter | [protected] |
interpolation_step_rt_ | ModelFitter | [protected] |
iso_stdev_first_ | ModelFitter | [protected] |
iso_stdev_last_ | ModelFitter | [protected] |
iso_stdev_stepsize_ | ModelFitter | [protected] |
isotope_stdev_ | ModelFitter | [protected] |
last_mz_model_ | ModelFitter | [protected] |
map_ | FeaFiModule | [protected] |
MapType typedef | FeaFiModule | |
max_isotope_ | ModelFitter | [protected] |
max_iteration_ | ModelFitter | [protected] |
model2D_ | ModelFitter | [protected] |
ModelFitter(const MSExperiment< PeakType > *map, FeatureMap< FeatureType > *features, FeatureFinder *ff) | ModelFitter | [inline] |
ModelFitter() | ModelFitter | [private] |
ModelFitter(const ModelFitter &) | ModelFitter | [private] |
monoisotopic_mz_ | ModelFitter | [protected] |
MZ enum value | ModelFitter | |
mz_input_data_ | ModelFitter | [protected] |
mz_stat_ | ModelFitter | [protected] |
operator=(const ModelFitter &) | ModelFitter | [private] |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
param_ | DefaultParamHandler | [protected] |
QualityType typedef | ModelFitter | |
RawDataArrayType typedef | ModelFitter | |
RawDataPointType typedef | ModelFitter | |
RT enum value | ModelFitter | |
rt_input_data_ | ModelFitter | [protected] |
rt_stat_ | ModelFitter | [protected] |
setMonoIsotopicMass(CoordinateType mz) | ModelFitter | [inline] |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
SpectrumType typedef | FeaFiModule | |
subsections_ | DefaultParamHandler | [protected] |
tolerance_stdev_box_ | ModelFitter | [protected] |
total_intensity_mz_ | ModelFitter | [protected] |
UNUSED enum value | FeatureFinderDefs | |
updateMembers_() | ModelFitter | [inline, protected, virtual] |
USED enum value | FeatureFinderDefs | |
~DefaultParamHandler() | DefaultParamHandler | [virtual] |
~FeaFiModule() | FeaFiModule | [inline, virtual] |
~ModelFitter() | ModelFitter | [inline, virtual] |