filterIdentificationsByBestHits(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, bool strict=false) | IDFilter | |
filterIdentificationsByBestNHits(const IdentificationType &identification, UInt n, IdentificationType &filtered_identification) | IDFilter | [inline] |
filterIdentificationsByBestNHits(MSExperiment< PeakT > &experiment, UInt n) | IDFilter | [inline] |
filterIdentificationsByExclusionPeptides(const PeptideIdentification &identification, std::vector< String > peptides, PeptideIdentification &filtered_identification) | IDFilter | |
filterIdentificationsByProteins(const PeptideIdentification &identification, std::vector< std::pair< String, String > > proteins, PeptideIdentification &filtered_identification) | IDFilter | |
filterIdentificationsByProteins(const ProteinIdentification &identification, std::vector< std::pair< String, String > > proteins, ProteinIdentification &filtered_identification) | IDFilter | |
filterIdentificationsByProteins(MSExperiment< PeakT > &experiment, std::vector< std::pair< String, String > >proteins) | IDFilter | [inline] |
filterIdentificationsByRTPValues(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, DoubleReal p_value=0.05) | IDFilter | |
filterIdentificationsByScore(const IdentificationType &identification, DoubleReal threshold_score, IdentificationType &filtered_identification) | IDFilter | [inline] |
filterIdentificationsByScores(MSExperiment< PeakT > &experiment, DoubleReal peptide_threshold_score, DoubleReal protein_threshold_score) | IDFilter | [inline] |
filterIdentificationsByThreshold(const IdentificationType &identification, DoubleReal threshold_fraction, IdentificationType &filtered_identification) | IDFilter | [inline] |
filterIdentificationsByThresholds(MSExperiment< PeakT > &experiment, DoubleReal peptide_threshold_fraction, DoubleReal protein_threshold_fraction) | IDFilter | [inline] |
IDFilter() | IDFilter | |
~IDFilter() | IDFilter | |