Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages

SqrtMower.h (Maintainer: Andreas Bertsch)

Go to the documentation of this file.
00001 // -*- Mode: C++; tab-width: 2; -*-
00002 // vi: set ts=2:
00003 //
00004 // --------------------------------------------------------------------------
00005 //                   OpenMS Mass Spectrometry Framework
00006 // --------------------------------------------------------------------------
00007 //  Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert
00008 //
00009 //  This library is free software; you can redistribute it and/or
00010 //  modify it under the terms of the GNU Lesser General Public
00011 //  License as published by the Free Software Foundation; either
00012 //  version 2.1 of the License, or (at your option) any later version.
00013 //
00014 //  This library is distributed in the hope that it will be useful,
00015 //  but WITHOUT ANY WARRANTY; without even the implied warranty of
00016 //  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
00017 //  Lesser General Public License for more details.
00018 //
00019 //  You should have received a copy of the GNU Lesser General Public
00020 //  License along with this library; if not, write to the Free Software
00021 //  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
00022 //
00023 // --------------------------------------------------------------------------
00024 // $Maintainer: Andreas Bertsch $
00025 // --------------------------------------------------------------------------
00026 //
00027 #ifndef OPENMS_FILTERING_TRANSFORMERS_SQRTMOWER_H
00028 #define OPENMS_FILTERING_TRANSFORMERS_SQRTMOWER_H
00029 
00030 #include <OpenMS/FILTERING/TRANSFORMERS/PreprocessingFunctor.h>
00031 #include <cmath>
00032 
00033 namespace OpenMS
00034 {
00040   class SqrtMower : public PreprocessingFunctor
00041   {
00042   public:
00043 
00044     // @name Constructors and Destructors
00045     // @{
00047     SqrtMower();
00048 
00050     SqrtMower(const SqrtMower& source);
00051 
00053     virtual ~SqrtMower();
00054     // @}
00055 
00056     // @name Operators
00057     // @{
00059     SqrtMower& operator=(const SqrtMower& source);
00060     // @}
00061 
00062     // @name Accessors
00063     // @{
00065     static PreprocessingFunctor* create() { return new SqrtMower(); }
00066 
00068     template <typename SpectrumType> void filterSpectrum(SpectrumType& spectrum)
00069     {
00070       for (typename SpectrumType::Iterator it = spectrum.begin(); it != spectrum.end(); ++it)
00071       {
00072         it->setIntensity(std::sqrt(it->getIntensity()));
00073       }
00074       return;
00075     }
00076 
00077     void filterPeakSpectrum(PeakSpectrum& spectrum);
00078 
00079     void filterPeakMap(PeakMap& exp);
00080 
00082     static const String getProductName()
00083     {
00084       return "SqrtMower";
00085     }
00086     // @}
00087     
00088   };
00089 
00090 }
00091 
00092 #endif // OPENMS_FILTERING_TRANSFORMERS_SQRTMOWER_H

Generated Tue Apr 1 15:36:38 2008 -- using doxygen 1.5.4 OpenMS / TOPP 1.1