Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages

OpenMS Class Index

A | B | C | D | E | F | G | H | I | L | M | N | O | P | Q | R | S | T | U | V | W | X | Z

  A  
MascotXMLHandler (OpenMS::Internal)   
AASequence (OpenMS)   MassAnalyzer (OpenMS)   
Acquisition (OpenMS)   MassAnalyzerVisualizer (OpenMS)   
AcquisitionInfo (OpenMS)   Matrix (OpenMS)   
AcquisitionInfoVisualizer (OpenMS)   MaxLikeliFitter1D (OpenMS)   
AcquisitionVisualizer (OpenMS)   MemoryMap (OpenMS)   
ANDIFile (OpenMS)   MetaInfo (OpenMS)   
ANDIHandler (OpenMS::Internal)   MetaInfoDescription (OpenMS)   
AreaIterator (OpenMS::Internal)   MetaInfoDescriptionVisualizer (OpenMS)   
AsymmetricStatistics (OpenMS::Math)   MetaInfoInterface (OpenMS)   
AveragePosition (OpenMS::Math)   MetaInfoRegistry (OpenMS)   
AxisTickCalculator (OpenMS)   MetaInfoVisualizer (OpenMS)   
AxisWidget (OpenMS)   MissingInformation (OpenMS::Exception)   
  B  
ModelDescription (OpenMS)   
Base (OpenMS::Exception)   ModelFitter (OpenMS)   
Base64 (OpenMS)   Modification (OpenMS)   
BaseAlignment (OpenMS)   ModificationVisualizer (OpenMS)   
BaseMapMatcher (OpenMS)   ModifierRep (OpenMS)   
BaseModel (OpenMS)   MorphFilter (OpenMS)   
BasePairFinder (OpenMS)   MSExperiment (OpenMS)   
BasePairwiseMapMatcher (OpenMS)   MSMetaDataExplorer (OpenMS)   
BaseSuperimposer (OpenMS)   MSSpectrum (OpenMS)   
BaseVisualizer (OpenMS)   MSSpectrum::RTLess (OpenMS)   
BasicStatistics (OpenMS::Math)   MultiGradient (OpenMS)   
BernNorm (OpenMS)   MultiGradientSelector (OpenMS)   
BiGaussFitter1D (OpenMS)   MzDataExpSettHandler (OpenMS::Internal)   
BiGaussModel (OpenMS)   MzDataFile (OpenMS)   
BigString (OpenMS)   MzDataHandler (OpenMS::Internal)   
BilinearInterpolation (OpenMS::Math)   MzIterator (OpenMS::Internal)   
binary_function (std)   MzXMLFile (OpenMS)   
BinnedRep (OpenMS)   MzXMLHandler (OpenMS::Internal)   
BinnedRepCompareFunctor (OpenMS)   
  N  
BinnedRepMutualInformation (OpenMS)   NeutralLossDiffFilter (OpenMS)   
BinnedRepSharedPeakCount (OpenMS)   NeutralLossMarker (OpenMS)   
BinnedRepSpectrumContrastAngle (OpenMS)   NLargest (OpenMS)   
BinnedRepSumAgreeingIntensities (OpenMS)   Normalizer (OpenMS)   
BufferOverflow (OpenMS::Exception)   NotImplemented (OpenMS::Exception)   
  C  
NullPointer (OpenMS::Exception)   
CGAL::Cartesian   
  O  
CGAL::Point_2   OMSSAXMLFile (OpenMS)   
ColorSelector (OpenMS)   OMSSAXMLHandler (OpenMS::Internal)   
ComplementFilter (OpenMS)   OpenDialog (OpenMS)   
ComplementMarker (OpenMS)   OptimizePeakDeconvolution (OpenMS)   
ConsensusFeature (OpenMS)   OptimizePick (OpenMS)   
ConsensusID (OpenMS)   OutOfGrid (OpenMS::Exception)   
ConsensusMap (OpenMS)   OutOfMemory (OpenMS::Exception)   
ConsensusPeak (OpenMS)   OutOfRange (OpenMS::Exception)   
ConsensusXMLFile (OpenMS)   
  P  
ConsensusXMLHandler (OpenMS::Internal)   pair (std)   
ContactPerson (OpenMS)   PairMatcher (OpenMS)   
ContactPersonVisualizer (OpenMS)   PairMatcher::Comparator (OpenMS)   
ContinuousWaveletTransform (OpenMS)   Param (OpenMS)   
ContinuousWaveletTransformNumIntegration (OpenMS)   Param::ParamEntry (OpenMS)   
ConversionError (OpenMS::Exception)   Param::ParamIterator (OpenMS)   
ConvexHull2D (OpenMS)   Param::ParamIterator::TraceInfo (OpenMS)   
  D  
Param::ParamNode (OpenMS)   
DataFilterDialog (OpenMS)   ParamEditor (OpenMS)   
DataFilters (OpenMS)   ParamEditorDelegate (OpenMS::Internal)   
DataFilters::DataFilter (OpenMS)   ParamTree (OpenMS::Internal)   
DataTable (OpenMS)   ParamXMLHandler (OpenMS::Internal)   
DataValue (OpenMS)   ParentFilter (OpenMS)   
Date (OpenMS)   ParentPeakMower (OpenMS)   
DateTime (OpenMS)   ParseError (OpenMS::Exception)   
DBAdapter (OpenMS)   Peak1D (OpenMS)   
DBConnection (OpenMS)   Peak2D (OpenMS)   
DBConnection::InvalidQuery (OpenMS)   PeakDensityFilter (OpenMS)   
DBConnection::NotConnected (OpenMS)   PeakFileOptions (OpenMS)   
DBoundingBox (OpenMS)   PeakIcon (OpenMS)   
DBSpectrumSelectorDialog (OpenMS)   PeakMarker (OpenMS)   
DefaultParamHandler (OpenMS)   PeakPicker (OpenMS)   
DelaunayPairFinder (OpenMS)   PeakPickerCWT (OpenMS)   
DelaunayPairFinder::GeometricTraits (OpenMS)   PeakPickerCWT::PeakArea_ (OpenMS)   
DelaunayPairFinder::GeometricTraits::Construct_center_2 (OpenMS)   PeakShape (OpenMS)   
DelaunayPairFinder::Point (OpenMS)   PeakShape::PositionLess (OpenMS)   
Digestion (OpenMS)   PeakShapeType (OpenMS)   
DigestionVisualizer (OpenMS)   PeakSpectrumCompareFunctor (OpenMS)   
DIntervalBase (OpenMS::Internal)   PeakTypeEstimator (OpenMS)   
DivisionByZero (OpenMS::Exception)   PenaltyFactors (OpenMS::OptimizationFunctions)   
DPeak (OpenMS)   PenaltyFactorsIntensity (OpenMS::OptimizationFunctions)   
DPeakArray (OpenMS)   PepIterator (OpenMS)   
DPeakConstReferenceArray (OpenMS)   PepNovoInfile (OpenMS)   
DPeakConstReferenceArray::DPeakConstReferenceArrayConstIterator (OpenMS)   PepNovoOutfile (OpenMS)   
DPeakConstReferenceArray::DPeakConstReferenceArrayIterator (OpenMS)   PeptideHit (OpenMS)   
DPosition (OpenMS)   PeptideHit::ScoreLess (OpenMS)   
DRange (OpenMS)   PeptideHit::ScoreMore (OpenMS)   
DRawDataPoint (OpenMS)   PeptideHitVisualizer (OpenMS)   
DRawDataPoint::IntensityLess (OpenMS)   PeptideIdentification (OpenMS)   
DRawDataPoint::NthPositionLess (OpenMS)   PeptideIdentificationVisualizer (OpenMS)   
DRawDataPoint::PositionLess (OpenMS)   PersistentObject (OpenMS)   
DSpectrum (OpenMS)   PickedPeak1D (OpenMS)   
DTA2DFile (OpenMS)   PickedPeak1D::WidthLess (OpenMS)   
DTAFile (OpenMS)   PILISScoring (OpenMS)   
  E  
PointerComparator (OpenMS)   
EdwardsLippertIterator (OpenMS)   PoseClusteringAffineSuperimposer (OpenMS)   
EdwardsLippertIteratorTryptic (OpenMS)   PoseClusteringPairwiseMapMatcher (OpenMS)   
Element (OpenMS)   PoseClusteringShiftSuperimposer (OpenMS)   
ElementDB (OpenMS)   PoseClusteringShiftSuperimposer::Shift (OpenMS)   
ElementNotFound (OpenMS::Exception)   Postcondition (OpenMS::Exception)   
ElementPair (OpenMS)   PreciseTime (OpenMS)   
EmgFitter1D (OpenMS)   Precondition (OpenMS::Exception)   
EmgFitter1D::Data (OpenMS)   Precursor (OpenMS)   
EmgModel (OpenMS)   PrecursorPeak (OpenMS::Internal)   
EmpiricalFormula (OpenMS)   PrecursorVisualizer (OpenMS)   
EnhancedTabBar (OpenMS)   PreprocessingFunctor (OpenMS)   
EnzymaticDigestion (OpenMS)   ProcessingMethod (OpenMS)   
ExperimentalSettings (OpenMS)   ProcessingMethodVisualizer (OpenMS)   
ExperimentalSettingsVisualizer (OpenMS)   ProcessResource (OpenMS)   
ExtendedIsotopeFitter1D (OpenMS)   ProductModel (OpenMS)   
ExtendedIsotopeModel (OpenMS)   ProgressLogger (OpenMS)   
ExternalAllocator (OpenMS)   ProteinHit (OpenMS)   
ExternalAllocator::rebind (OpenMS)   ProteinHitVisualizer (OpenMS)   
ExternalAllocatorUnique (OpenMS)   ProteinIdentification (OpenMS)   
  F  
ProteinIdentification::SearchParameters (OpenMS)   
Factory (OpenMS)   ProteinIdentificationVisualizer (OpenMS)   
FactoryBase (OpenMS)   ProtonDistributionModel (OpenMS)   
FactoryProduct (OpenMS)   PTMXMLFile (OpenMS)   
FASTAFile (OpenMS)   PTMXMLHandler (OpenMS::Internal)   
FastaIterator (OpenMS)   
  Q  
FastaIteratorIntern (OpenMS)   QDate   
FeaFiModule (OpenMS)   QDateTime   
Feature (OpenMS)   QDialog   
Feature::OverallQualityLess (OpenMS)   QGLWidget   
FeatureDecharger (OpenMS)   QItemDelegate   
FeatureFinder (OpenMS)   QMainWindow   
FeatureFinderAlgorithm (OpenMS)   QTabBar   
FeatureFinderAlgorithmPicked (OpenMS)   QTreeWidget   
FeatureFinderAlgorithmPicked::IsotopePattern (OpenMS)   QWidget   
FeatureFinderAlgorithmPicked::MassTrace (OpenMS)   
  R  
FeatureFinderAlgorithmPicked::MassTraces (OpenMS)   RangeManager (OpenMS)   
FeatureFinderAlgorithmPicked::PeakInfo (OpenMS)   RawDataPoint1D (OpenMS)   
FeatureFinderAlgorithmPicked::Seed (OpenMS)   RawDataPoint1D::IntensityLess (OpenMS)   
FeatureFinderAlgorithmPicked::TheoreticalIsotopePattern (OpenMS)   RawDataPoint1D::PositionLess (OpenMS)   
FeatureFinderAlgorithmSimple (OpenMS)   RawDataPoint2D (OpenMS)   
FeatureFinderAlgorithmSimplest (OpenMS)   RawDataPoint2D::IntensityLess (OpenMS)   
FeatureFinderDefs (OpenMS)   RawDataPoint2D::NthPositionLess (OpenMS)   
FeatureFinderDefs::NoSuccessor (OpenMS)   RawDataPoint2D::PositionLess (OpenMS)   
FeatureFinderDefs::UnableToFit (OpenMS)   RequiredParameterNotGiven (OpenMS::Exception)   
FeatureMap (OpenMS)   Residue (OpenMS)   
FeaturePairsHandler (OpenMS::Internal)   ResidueDB (OpenMS)   
FeaturePairsXMLFile (OpenMS)   ResidueModification (OpenMS)   
FeatureXMLFile (OpenMS)   ReverseComparator (OpenMS)   
FeatureXMLHandler (OpenMS::Internal)   ROCCurve (OpenMS::Math)   
File (OpenMS)   ROCCurve::simsortdec (OpenMS::Math)   
FileEmpty (OpenMS::Exception)   RtIterator (OpenMS::Internal)   
FileHandler (OpenMS)   
  S  
FileNotFound (OpenMS::Exception)   Sample (OpenMS)   
FileNotReadable (OpenMS::Exception)   SampleTreatment (OpenMS)   
FilterFunctor (OpenMS)   SampleVisualizer (OpenMS)   
Fitter1D (OpenMS)   SaveImageDialog (OpenMS)   
FuzzyStringComparator (OpenMS)   SavitzkyGolayFilter (OpenMS)   
FuzzyStringComparator::AbortComparison (OpenMS)   Scaler (OpenMS)   
  G  
SequestInfile (OpenMS)   
GaussFilter (OpenMS)   SequestOutfile (OpenMS)   
GaussFitter1D (OpenMS)   SignalToNoiseEstimator (OpenMS)   
GaussModel (OpenMS)   SignalToNoiseEstimator::GaussianEstimate (OpenMS)   
GlobalExceptionHandler (OpenMS::Exception)   SignalToNoiseEstimatorMeanIterative (OpenMS)   
GoodDiffFilter (OpenMS)   SignalToNoiseEstimatorMedian (OpenMS)   
Gradient (OpenMS)   SimpleExtender (OpenMS)   
GradientVisualizer (OpenMS)   SimpleExtender::IndexWithPriority (OpenMS)   
Grid (OpenMS)   SimpleExtender::IndexWithPriority::PriorityLess (OpenMS)   
GridCell (OpenMS)   SimplePairFinder (OpenMS)   
GridFile (OpenMS)   SimpleSeeder (OpenMS)   
GridHandler (OpenMS::Internal)   SingletonRegistry (OpenMS)   
Group (OpenMS)   SizeUnderflow (OpenMS::Exception)   
  H  
SmoothFilter (OpenMS)   
HashFunction (OpenMS)   Software (OpenMS)   
HashMap (OpenMS)   SoftwareVisualizer (OpenMS)   
HashMap::ConstIterator (OpenMS)   SourceFile (OpenMS)   
HashMap::IllegalKey (OpenMS)   SourceFileVisualizer (OpenMS)   
HashMap::Iterator (OpenMS)   SparseVector (OpenMS)   
HashMap::Node (OpenMS)   SparseVector::DoubleProxy (OpenMS)   
HasScanMode (OpenMS)   SparseVector::SparseVectorConstIterator (OpenMS)   
HierarchicalClustering (OpenMS)   SparseVector::SparseVectorIterator (OpenMS)   
Histogram (OpenMS::Math)   Spectrum1DCanvas (OpenMS)   
HistogramDialog (OpenMS)   Spectrum1DGoToDialog (OpenMS)   
HistogramWidget (OpenMS)   Spectrum1DPrefDialog (OpenMS::Internal)   
HPLC (OpenMS)   Spectrum1DWidget (OpenMS)   
HPLCVisualizer (OpenMS)   Spectrum2DCanvas (OpenMS)   
  I  
Spectrum2DGoToDialog (OpenMS)   
IDFeatureMapper (OpenMS)   Spectrum2DPrefDialog (OpenMS::Internal)   
IDFilter (OpenMS)   Spectrum2DWidget (OpenMS)   
IDSpectrumMapper (OpenMS)   Spectrum3DCanvas (OpenMS)   
IdXMLFile (OpenMS)   Spectrum3DOpenGLCanvas (OpenMS)   
IllegalArgument (OpenMS::Exception)   Spectrum3DPrefDialog (OpenMS::Internal)   
IllegalPosition (OpenMS::Exception)   Spectrum3DWidget (OpenMS)   
IllegalSelfOperation (OpenMS::Exception)   SpectrumAlignment (OpenMS)   
IllegalTreeOperation (OpenMS::Exception)   SpectrumAlignmentScore (OpenMS)   
IncompatibleIterators (OpenMS::Exception)   SpectrumCanvas (OpenMS)   
IndexOverflow (OpenMS::Exception)   SpectrumCheapDPCorr (OpenMS)   
IndexTuple (OpenMS)   SpectrumPrecursorComparator (OpenMS)   
IndexTuple::IndexLess (OpenMS)   SpectrumSettings (OpenMS)   
IndexUnderflow (OpenMS::Exception)   SpectrumSettingsVisualizer (OpenMS)   
INIFileEditorWindow (OpenMS)   SpectrumWidget (OpenMS)   
InIntensityRange (OpenMS)   SqrtMower (OpenMS)   
InMSLevelRange (OpenMS)   StarAlignment (OpenMS)   
InMzRange (OpenMS)   StopWatch (OpenMS)   
InRTRange (OpenMS)   String (OpenMS)   
InspectInfile (OpenMS)   StringList (OpenMS)   
InspectOutfile (OpenMS)   StringManager (OpenMS::Internal)   
Instrument (OpenMS)   SuffixArray (OpenMS)   
InstrumentSettings (OpenMS)   SuffixArrayPeptideFinder (OpenMS)   
InstrumentSettingsVisualizer (OpenMS)   SuffixArraySeqan (OpenMS)   
InstrumentVisualizer (OpenMS)   SuffixArrayTrypticCompressed (OpenMS)   
IntensityBalanceFilter (OpenMS)   SuffixArrayTrypticSeqan (OpenMS)   
IntensityIterator (OpenMS::Internal)   SVMWrapper (OpenMS)   
IntensityLess (OpenMS::Internal)   
  T  
InternalCalibration (OpenMS)   Tagging (OpenMS)   
InterpolationModel (OpenMS)   TaggingVisualizer (OpenMS)   
InvalidIterator (OpenMS::Exception)   TextFile (OpenMS)   
InvalidParameter (OpenMS::Exception)   TheoreticalSpectrumGenerator (OpenMS)   
InvalidRange (OpenMS::Exception)   ThresholdMower (OpenMS)   
InvalidSize (OpenMS::Exception)   TICFilter (OpenMS)   
InvalidValue (OpenMS::Exception)   TimeStamp (OpenMS)   
IonDetector (OpenMS)   TOFCalibration (OpenMS)   
IonDetectorVisualizer (OpenMS)   TOFCalibration::UnableToCalibrate (OpenMS)   
IonSource (OpenMS)   ToolsDialog (OpenMS)   
IonSourceVisualizer (OpenMS)   TopHatFilter (OpenMS)   
IsEmptySpectrum (OpenMS)   TOPPBase (OpenMS)   
IsotopeCluster (OpenMS)   TOPPBase::ParameterInformation (OpenMS)   
IsotopeCluster::ChargedIndexSet (OpenMS)   TOPPViewBase (OpenMS)   
IsotopeDiffFilter (OpenMS)   TOPPViewPrefDialog (OpenMS::Internal)   
IsotopeDistribution (OpenMS)   TrypticIterator (OpenMS)   
IsotopeFitter1D (OpenMS)   TwoDOptimization (OpenMS)   
IsotopeMarker (OpenMS)   TwoDOptimization::IndexLess (OpenMS)   
IsotopeModel (OpenMS)   
  U  
IsotopeWavelet (OpenMS)   Ui::DataFilterDialogTemplate   
IsotopeWavelet::fi_ (OpenMS)   Ui::LayerStatisticsDialogTemplate   
IsotopeWaveletTransform (OpenMS)   Ui::OpenDialogTemplate   
IsotopeWaveletTransform::BoxElement_ (OpenMS)   Ui::ParamEditorTemplate   
iterator (std)   Ui::Spectrum1DGoToDialogTemplate   
  L  
Ui::Spectrum1DPrefDialogTemplate   
LayerData (OpenMS)   Ui::Spectrum2DGoToDialogTemplate   
LayerStatisticsDialog (OpenMS)   Ui::Spectrum2DPrefDialogTemplate   
LayerStatisticsDialog::MetaStatsValue_ (OpenMS)   Ui::Spectrum3DPrefDialogTemplate   
LevMarqFitter1D (OpenMS)   Ui::TOPPViewPrefDialogTemplate   
LexicographicComparator (OpenMS)   UnableToCreateFile (OpenMS::Exception)   
LibSVMEncoder (OpenMS)   unary_function (std)   
LinearInterpolation (OpenMS::Math)   UniqueIdGenerator (OpenMS)   
LinearMapping (OpenMS)   UnregisteredParameter (OpenMS::Exception)   
LinearRegression (OpenMS::Math)   
  V  
LinearResampler (OpenMS)   VersionInfo (OpenMS)   
LmaGaussFitter1D (OpenMS)   
  W  
LmaGaussFitter1D::Data (OpenMS)   WindowMower (OpenMS)   
LmaGaussModel (OpenMS)   WrongParameterType (OpenMS::Exception)   
LmaIsotopeFitter1D (OpenMS)   
  X  
LmaIsotopeFitter1D::Data (OpenMS)   xercesc::DefaultHandler   
LmaIsotopeModel (OpenMS)   xercesc::ErrorHandler   
  M  
XMLFile (OpenMS::Internal)   
MapDewarper (OpenMS)   XMLHandler (OpenMS::Internal)   
MapMatcherRegression (OpenMS)   XMLHandler::EndParsingSoftly (OpenMS::Internal)   
MarkerMower (OpenMS)   XMLValidator (OpenMS)   
MascotInfile (OpenMS)   
  Z  
MascotOutfile (OpenMS)   ZhangSimilarityScore (OpenMS)   
MascotXMLFile (OpenMS)   

A | B | C | D | E | F | G | H | I | L | M | N | O | P | Q | R | S | T | U | V | W | X | Z


Generated Tue Apr 1 15:36:41 2008 -- using doxygen 1.5.4 OpenMS / TOPP 1.1