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SuffixArraySeqan Member List

This is the complete list of members for SuffixArraySeqan, including all inherited members.

findFirst_(const std::vector< double > &spec, double &m)SuffixArraySeqan [protected]
findFirst_(const std::vector< double > &spec, double &m, int start, int end)SuffixArraySeqan [protected]
findSpec(std::vector< std::vector< std::pair< std::pair< int, int >, float > > > &candidates, const std::vector< double > &spec)SuffixArraySeqan [virtual]
getNumberOfModifications()SuffixArraySeqan [virtual]
getTags()SuffixArraySeqan [virtual]
getTolerance() const SuffixArraySeqan [virtual]
getUseTags()SuffixArraySeqan [virtual]
goNext(seqan::Iter< TIndex, seqan::VSTree< seqan::TopDown< seqan::ParentLinks< TSpec > > > > &it, double &m, std::stack< double > &allm, std::stack< std::map< double, int > > &mod_map)SuffixArraySeqan [inline]
goNextSubTree(seqan::Iter< TIndex, seqan::VSTree< seqan::TopDown< seqan::ParentLinks< TSpec > > > > &it, double &m, std::stack< double > &allm, std::stack< std::map< double, int > > &mod_map)SuffixArraySeqan [inline]
goNextSubTree(seqan::Iter< TIndex, seqan::VSTree< seqan::TopDown< seqan::ParentLinks< TSpec > > > > &it)SuffixArraySeqan [inline]
index_SuffixArraySeqan [protected]
isDigestingEnd(const char aa1, const char aa2) const SuffixArraySeqan [virtual]
it_SuffixArraySeqan [protected]
masse_SuffixArraySeqan [protected]
number_of_modifications_SuffixArraySeqan [protected]
open(const String &file_name)SuffixArraySeqan [virtual]
parseTree(seqan::Iter< TIndex, seqan::VSTree< seqan::TopDown< seqan::ParentLinks< TSpec > > > > &it, std::vector< std::pair< int, int > > &out_number, std::vector< std::pair< int, int > > &edge_length, std::vector< int > &leafe_depth)SuffixArraySeqan [inline]
printStatistic()SuffixArraySeqan [virtual]
s_SuffixArraySeqan [protected]
save(const String &file_name)SuffixArraySeqan [virtual]
setNumberOfModifications(unsigned int number_of_mods)SuffixArraySeqan [virtual]
setTags(const std::vector< OpenMS::String > &tags)SuffixArraySeqan [virtual]
setTolerance(double t)SuffixArraySeqan [virtual]
setUseTags(bool use_tags)SuffixArraySeqan [virtual]
SuffixArray(const String &st, const String &sa_file_name)SuffixArray
SuffixArray(const SuffixArray &sa)SuffixArray
SuffixArray()SuffixArray
SuffixArraySeqan(const String &st, const String &sa_file_name)SuffixArraySeqan
SuffixArraySeqan(const SuffixArraySeqan &source)SuffixArraySeqan
tags_SuffixArraySeqan [protected]
TIndex typedefSuffixArraySeqan [private]
tol_SuffixArraySeqan [protected]
toString()SuffixArraySeqan [virtual]
use_tags_SuffixArraySeqan [protected]
~SuffixArray()=0SuffixArray [pure virtual]
~SuffixArraySeqan()SuffixArraySeqan [virtual]


Generated Tue Apr 1 15:36:44 2008 -- using doxygen 1.5.4 OpenMS / TOPP 1.1