addSynonym(const String &synonym) | Residue | |
AIon enum value | Residue | |
average_weight_ | Residue | [protected] |
BIon enum value | Residue | |
CIon enum value | Residue | |
CTerminal enum value | Residue | |
formula_ | Residue | [protected] |
Full enum value | Residue | |
gb_bb_l_ | Residue | [protected] |
gb_bb_r_ | Residue | [protected] |
gb_sc_ | Residue | [protected] |
getAIonToFull() | Residue | [inline, static] |
getAIonToFullAverageWeight() | Residue | [inline, static] |
getAIonToFullMonoWeight() | Residue | [inline, static] |
getAverageWeight(ResidueType res_type=Full) const | Residue | |
getBackboneBasicityLeft() const | Residue | |
getBackboneBasicityRight() const | Residue | |
getBIonToFull() | Residue | [inline, static] |
getBIonToFullAverageWeight() | Residue | [inline, static] |
getBIonToFullMonoWeight() | Residue | [inline, static] |
getCIonToFull() | Residue | [inline, static] |
getCIonToFullAverageWeight() | Residue | [inline, static] |
getCIonToFullMonoWeight() | Residue | [inline, static] |
getCTerminalToFull() | Residue | [inline, static] |
getCTerminalToFullAverageWeight() | Residue | [inline, static] |
getCTerminalToFullMonoWeight() | Residue | [inline, static] |
getFormula(ResidueType res_type=Full) const | Residue | |
getInternalToFull() | Residue | [inline, static] |
getInternalToFullAverageWeight() | Residue | [inline, static] |
getInternalToFullMonoWeight() | Residue | [inline, static] |
getLossAverageWeight() const | Residue | |
getLossFormula() const | Residue | |
getLossMonoWeight() const | Residue | |
getLossName() const | Residue | |
getLowMassIons() const | Residue | |
getModification() const | Residue | |
getMonoWeight(ResidueType res_type=Full) const | Residue | |
getName() const | Residue | |
getNTerminalToFull() | Residue | [inline, static] |
getNTerminalToFullAverageWeight() | Residue | [inline, static] |
getNTerminalToFullMonoWeight() | Residue | [inline, static] |
getOneLetterCode() const | Residue | |
getPiValue() const | Residue | |
getPka() const | Residue | |
getPkb() const | Residue | |
getPkc() const | Residue | |
getShortName() const | Residue | |
getSideChainBasicity() const | Residue | |
getSynonyms() const | Residue | |
getThreeLetterCode() const | Residue | |
getUnmodifiedName() const | Residue | |
getXIonToFull() | Residue | [inline, static] |
getXIonToFullAverageWeight() | Residue | [inline, static] |
getXIonToFullMonoWeight() | Residue | [inline, static] |
getYIonToFull() | Residue | [inline, static] |
getYIonToFullAverageWeight() | Residue | [inline, static] |
getYIonToFullMonoWeight() | Residue | [inline, static] |
getZIonToFull() | Residue | [inline, static] |
getZIonToFullAverageWeight() | Residue | [inline, static] |
getZIonToFullMonoWeight() | Residue | [inline, static] |
hasNeutralLoss() const | Residue | |
Internal enum value | Residue | |
internal_formula_ | Residue | [protected] |
is_modified_ | Residue | [protected] |
isModified() const | Residue | |
loss_average_weight_ | Residue | [protected] |
loss_formula_ | Residue | [protected] |
loss_mono_weight_ | Residue | [protected] |
loss_name_ | Residue | [protected] |
low_mass_ions_ | Residue | [protected] |
LowMassConstIterator typedef | Residue | |
LowMassIterator typedef | Residue | |
modification_ | Residue | [protected] |
mono_weight_ | Residue | [protected] |
name_ | Residue | [protected] |
NTerminal enum value | Residue | |
one_letter_code_ | Residue | [protected] |
operator!=(const Residue &residue) const | Residue | |
operator!=(char one_letter_code) const | Residue | |
operator<<(std::ostream &os, const Residue &residue) | Residue | [friend] |
operator=(const Residue &residue) | Residue | |
operator==(const Residue &residue) const | Residue | |
operator==(char one_letter_code) const | Residue | |
pka_ | Residue | [protected] |
pkb_ | Residue | [protected] |
pkc_ | Residue | [protected] |
pre_mod_name_ | Residue | [protected] |
Residue() | Residue | |
Residue(const Residue &residue) | Residue | |
Residue(const String &name, const String &three_letter_code, const String &one_letter_code, const EmpiricalFormula &formula, const EmpiricalFormula &neutral_loss) | Residue | |
ResidueType enum name | Residue | |
setAverageWeight(DoubleReal weight, ResidueType res_type=Full) | Residue | |
setBackboneBasicityLeft(DoubleReal gb_bb_l) | Residue | |
setBackboneBasicityRight(DoubleReal gb_bb_r) | Residue | |
setFormula(const EmpiricalFormula &formula, ResidueType res_type=Full) | Residue | |
setLossAverageWeight(DoubleReal weight) | Residue | |
setLossFormula(const EmpiricalFormula &) | Residue | |
setLossMonoWeight(DoubleReal weight) | Residue | |
setLossName(const String &name) | Residue | |
setLowMassIons(const std::vector< EmpiricalFormula > &low_mass_ions) | Residue | |
setModification(ResidueModification *modification) | Residue | |
setMonoWeight(DoubleReal weight, ResidueType res_type=Full) | Residue | |
setName(const String &name) | Residue | |
setOneLetterCode(const String &one_letter_code) | Residue | |
setPka(DoubleReal value) | Residue | |
setPkb(DoubleReal value) | Residue | |
setPkc(DoubleReal value) | Residue | |
setShortName(const String &short_name) | Residue | |
setSideChainBasicity(DoubleReal gb_sc) | Residue | |
setSynonyms(const std::set< String > &synonyms) | Residue | |
setThreeLetterCode(const String &three_letter_code) | Residue | |
setUnmodifiedName(const String &name) | Residue | |
short_name_ | Residue | [protected] |
synonyms_ | Residue | [protected] |
three_letter_code_ | Residue | [protected] |
XIon enum value | Residue | |
YIon enum value | Residue | |
ZIon enum value | Residue | |
~Residue() | Residue | [virtual] |