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- p -
p_ :
TheoreticalSpectrumGenerator
pair_ :
FeaturePairsHandler
pair_finder_ :
PoseClusteringPairwiseMapMatcher
pair_min_quality_ :
SimplePairFinder
pairs_ :
PairMatcher
,
FeaturePairsHandler
param :
LayerData
param_ :
SVMWrapper
,
ParamEditor
,
INIFileEditorWindow
,
TOPPBase
,
DefaultParamHandler
,
FeaturePairsHandler
,
FeatureXMLHandler
,
ParamXMLHandler
,
IdXMLFile
param_cmdline_ :
TOPPBase
param_common_ :
TOPPBase
param_common_tool_ :
TOPPBase
param_inifile_ :
TOPPBase
param_instance_ :
TOPPBase
parameters_ :
TOPPBase
,
IdXMLFile
,
ModelDescription
parent_m_z_ :
BinnedRep
partial_sequence_ :
SequestInfile
path_ :
ParamXMLHandler
path_to_file_ :
SourceFile
,
SourceFileVisualizer
pattern_score :
FeatureFinderAlgorithmPicked::PeakInfo
pattern_tolerance_ :
FeatureFinderAlgorithmPicked
peak :
FeatureFinderAlgorithmPicked::Seed
,
FeatureFinderAlgorithmPicked::IsotopePattern
peak_bound_ :
PeakPicker
peak_bound_cwt_ :
PeakPickerCWT
peak_bound_ms2_level_ :
PeakPicker
peak_bound_ms2_level_cwt_ :
PeakPickerCWT
peak_corr_bound_ :
PeakPickerCWT
peak_count_ :
MzDataHandler
,
MzXMLHandler
peak_cutoff_intercept_ :
IsotopeWaveletTransform
peak_cutoff_slope_ :
IsotopeWaveletTransform
peak_map_ :
SpectrumCheapDPCorr
peak_mass_tolerance :
ProteinIdentification::SearchParameters
peak_mass_tolerance_ :
InspectInfile
,
SequestInfile
peak_shapes_ :
PeakPickerCWT
peak_tolerance_ :
ProteinIdentificationVisualizer
peaks :
FeatureFinderAlgorithmPicked::MassTrace
,
LayerData
peaks_ :
IsotopeCluster
pen_width_ :
AxisWidget
penalties_ :
OptimizePeakDeconvolution
,
OptimizePick
,
TwoDOptimization
pep_hit_ :
IdXMLFile
pep_id_ :
IdXMLFile
pep_ids_ :
IdXMLFile
peptide_ :
AASequence
peptide_identification_index_ :
MascotXMLHandler
peptide_identifications_ :
OMSSAXMLHandler
peptide_mass_unit_ :
SequestInfile
peptidehit_charge_ :
PeptideHitVisualizer
peptidehit_rank_ :
PeptideHitVisualizer
peptidehit_score_ :
PeptideHitVisualizer
peptidehit_sequence_ :
PeptideHitVisualizer
percentage_ :
GradientVisualizer
percentage_factor_ :
SpectrumCanvas
percentages_ :
Gradient
persistence_id_ :
PersistentObject
ph_ :
Digestion
pidv_caller_ :
PeptideIdentificationVisualizer
,
ProteinIdentificationVisualizer
pka_ :
Residue
pkb_ :
Residue
pkc_ :
Residue
points_ :
ConvexHull2D
pol_ :
ANDIHandler
polarity_ :
InstrumentSettings
,
IonSource
pos :
PenaltyFactors
pos_ :
ConsensusXMLHandler
,
ROCCurve
pos_col_ :
MultiGradient
pos_range_ :
ConsensusXMLHandler
,
RangeManager
position_ :
PoseClusteringShiftSuperimposer::Shift
,
HashMap::Iterator
,
HashMap::ConstIterator
,
SparseVector::SparseVectorIterator
,
SparseVector::SparseVectorConstIterator
,
DPeakConstReferenceArray::DPeakConstReferenceArrayConstIterator
,
DRawDataPoint
,
RawDataPoint1D
,
RawDataPoint2D
,
AveragePosition
position_range_ :
ConsensusFeature
,
ConsensusPeak
position_weighted_sum_ :
AveragePosition
pre_ :
MultiGradient
pre_min_ :
MultiGradient
pre_mod_name_ :
Residue
pre_size_ :
MultiGradient
pre_steps_ :
MultiGradient
precision_ :
DelaunayPairFinder
,
MzXMLHandler
precisions_ :
MzDataHandler
precursor_ :
SpectrumSettings
precursor_activation_energy_ :
PrecursorVisualizer
precursor_activation_method_ :
PrecursorVisualizer
precursor_energy_units_ :
PrecursorVisualizer
precursor_mass_tolerance_ :
InspectInfile
,
MascotInfile
,
SequestInfile
precursor_peak_ :
DSpectrum
precursor_tolerance :
ProteinIdentification::SearchParameters
precursor_tolerance_ :
ProteinIdentificationVisualizer
precursor_window_size_ :
PrecursorVisualizer
precursorpeakcharge_ :
BinnedRep
prefs_ :
OpenDialog
pressure_ :
HPLC
print_duplicate_references_ :
SequestInfile
priorities_ :
SimpleExtender
priority :
SimpleExtender::IndexWithPriority
priority_threshold_ :
SimpleExtender
processing_method_ :
ExperimentalSettings
processingmethod_charge_deconvolution_ :
ProcessingMethodVisualizer
processingmethod_deisotoping_ :
ProcessingMethodVisualizer
processingmethod_intensity_cutoff_ :
ProcessingMethodVisualizer
processingmethod_method_ :
ProcessingMethodVisualizer
prod_ :
IsotopeWaveletTransform
progress_ :
SuffixArrayTrypticCompressed
projection_box_ :
Spectrum2DWidget
projection_horz_ :
Spectrum2DWidget
projection_max_ :
Spectrum2DWidget
projection_mz_ :
Spectrum2DCanvas
projection_peaks_ :
Spectrum2DWidget
projection_rt_ :
Spectrum2DCanvas
projection_sum_ :
Spectrum2DWidget
projection_vert_ :
Spectrum2DWidget
projections_2d_ :
TOPPViewBase
prot_hit_ :
IdXMLFile
prot_id_ :
IdXMLFile
prot_ids_ :
IdXMLFile
protein_hits_ :
ProteinIdentification
protein_identification_ :
OMSSAXMLHandler
,
MascotXMLHandler
protein_identifications_ :
ExperimentalSettings
protein_mass_filter_ :
SequestInfile
protein_name_length_ :
InspectOutfile
protein_score_type_ :
ProteinIdentification
protein_significance_threshold_ :
ProteinIdentification
proteinhit_accession_ :
ProteinHitVisualizer
proteinhit_rank_ :
ProteinHitVisualizer
proteinhit_score_ :
ProteinHitVisualizer
proteinhit_sequence_ :
ProteinHitVisualizer
proteinid_to_accession_ :
IdXMLFile
psi_ :
IsotopeWaveletTransform
ptm_informations_ :
PTMXMLHandler
PTMname_residues_mass_type_ :
InspectInfile
,
SequestInfile
,
PepNovoInfile
ptr_ :
PeptideIdentificationVisualizer
,
InstrumentVisualizer
,
ProteinIdentificationVisualizer
,
ProteinHitVisualizer
,
PeptideHitVisualizer
,
PrecursorVisualizer
,
ModificationVisualizer
,
TaggingVisualizer
,
AcquisitionVisualizer
,
HPLCVisualizer
,
ExperimentalSettingsVisualizer
,
MetaInfoDescriptionVisualizer
,
MassAnalyzerVisualizer
,
ProcessingMethodVisualizer
,
GradientVisualizer
,
DigestionVisualizer
,
SpectrumSettingsVisualizer
,
SampleVisualizer
,
InstrumentSettingsVisualizer
,
ContactPersonVisualizer
,
IonDetectorVisualizer
,
IonSourceVisualizer
,
SoftwareVisualizer
,
AcquisitionInfoVisualizer
,
SourceFileVisualizer
,
MetaInfoVisualizer
Generated Tue Apr 1 15:36:41 2008 -- using doxygen 1.5.4
OpenMS / TOPP 1.1