#include <OpenMS/DATASTRUCTURES/SuffixArrayTrypticSeqan.h>
This class uses SEQAN suffix array. It can just be used for finding peptide Candidates for a given MS Spectrum within a certain mass tolerance. The suffix array can be saved to disc for reused so it has to be build just once.
Public Member Functions | |
SuffixArrayTrypticSeqan (const String &st, const String &sa_file_name) throw (Exception::InvalidValue,Exception::FileNotFound) | |
bool | isDigestingEnd (const char aa1, const char aa2) const |
returns if an enzyme will cut after first character |
SuffixArrayTrypticSeqan | ( | const String & | st, | |
const String & | sa_file_name | |||
) | throw (Exception::InvalidValue,Exception::FileNotFound) |
bool isDigestingEnd | ( | const char | aa1, | |
const char | aa2 | |||
) | const [virtual] |
returns if an enzyme will cut after first character
aa1 | const char as first aminoacid | |
aa2 | const char as second aminoacid |
Reimplemented from SuffixArraySeqan.
Generated Tue Apr 1 15:36:44 2008 -- using doxygen 1.5.4 | OpenMS / TOPP 1.1 |