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IdXMLFile Member List

This is the complete list of members for IdXMLFile, including all inherited members.

asBool_(const String &in)XMLHandler [inline, protected]
asDateTime_(const String &in)XMLHandler [inline, protected]
asDouble_(const String &in)XMLHandler [inline, protected]
asFloat_(const String &in)XMLHandler [inline, protected]
asInt_(const String &in)XMLHandler [inline, protected]
asInt_(const XMLCh *in)XMLHandler [inline, protected]
asUInt_(const String &in)XMLHandler [inline, protected]
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
attributeAsInt_(const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
attributeAsString_(const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
characters(const XMLCh *const chars, unsigned int length)XMLHandler [protected, virtual]
cv_terms_XMLHandler [protected]
cvStringToEnum_(UInt section, const String &term, const char *message)XMLHandler [inline, protected]
endElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname)IdXMLFile [protected, virtual]
equal_(const XMLCh *a, const XMLCh *b)XMLHandler [inline, protected]
error(const xercesc::SAXParseException &exception)XMLHandler [protected]
error(const String &msg, UInt line=0, UInt column=0) const XMLHandler [protected]
error_message_XMLHandler [mutable, protected]
errorString()XMLHandler [protected]
fatalError(const xercesc::SAXParseException &exception)XMLHandler [protected]
fatalError(const String &msg, UInt line=0, UInt column=0) const XMLHandler [protected]
file_XMLHandler [protected]
getVersion() const XMLFile
id_IdXMLFile [protected]
IdXMLFile()IdXMLFile
isValid(const String &filename)XMLFile
last_meta_IdXMLFile [protected]
load(const String &filename, std::vector< ProteinIdentification > &protein_ids, std::vector< PeptideIdentification > &peptide_ids)IdXMLFile
open_tags_XMLHandler [protected]
optionalAttributeAsDouble_(DoubleReal &value, const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
optionalAttributeAsDouble_(DoubleReal &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
param_IdXMLFile [protected]
parameters_IdXMLFile [protected]
parse_(const String &filename, XMLHandler *handler)XMLFile [protected]
pep_hit_IdXMLFile [protected]
pep_id_IdXMLFile [protected]
pep_ids_IdXMLFile [protected]
prot_hit_IdXMLFile [protected]
prot_id_IdXMLFile [protected]
prot_ids_IdXMLFile [protected]
proteinid_to_accession_IdXMLFile [protected]
save_(const String &filename, XMLHandler *handler) const XMLFile [protected]
schema_location_XMLFile [protected]
schema_version_XMLFile [protected]
sm_XMLHandler [protected]
startElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname, const xercesc::Attributes &attributes)IdXMLFile [protected, virtual]
store(String filename, const std::vector< ProteinIdentification > &protein_ids, const std::vector< PeptideIdentification > &peptide_ids)IdXMLFile
version_XMLHandler [protected]
warning(const xercesc::SAXParseException &exception)XMLHandler [protected]
warning(const String &msg, UInt line=0, UInt column=0) const XMLHandler [protected]
writeCVS_(std::ostream &os, DoubleReal value, const String &acc, const String &name, int indent=4) const XMLHandler [inline, protected]
writeCVS_(std::ostream &os, const String &value, const String &acc, const String &name, int indent=4) const XMLHandler [inline, protected]
writeCVS_(std::ostream &os, int value, int map, const String &acc, const String &name, int indent=4)XMLHandler [protected]
writeTo(std::ostream &)XMLHandler [inline, protected, virtual]
writeUserParam_(std::ostream &os, const MetaInfoInterface &meta, int indent=4)XMLHandler [inline, protected]
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const XMLHandler [protected]
XMLFile()XMLFile
XMLFile(const String &schema_location, const String &version)XMLFile
XMLHandler(const String &filename, const String &version)XMLHandler [protected]
~XMLFile()XMLFile
~XMLHandler()XMLHandler [protected, virtual]


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