Name | Type | Default | Restrictions | Description |
similarity:max_pair_distance:RT | float | 20 | | Consider element el_1 of a map map_1 and element el_2 el_2 of a different map map_2. Then el_1 is assigned to el_2 if they are nearest neighbors and if all other elements in map_1 have a distance greater max_pair_distance::RT to el_2 as well as all other elements in map_2 have a distance greater max_pair_distance::RT to el_1. |
similarity:max_pair_distance:MZ | float | 1 | | Consider element el_1 of a map map_1 and element el_2 el_2 of a different map map_2. Then el_1 is assigned to el_2 if they are nearest neighbors and if all other elements in map_1 have a distance greater max_pair_distance::MZ to el_2 as well as all other elements in map_2 have a distance greater max_pair_distance::MZ to el_1. |
similarity:precision:RT | float | 60 | | Maximal deviation in RT of two elements in different maps to be considered as a corresponding element. |
similarity:precision:MZ | float | 0.5 | | Maximal deviation in m/z of two elements in different maps to be considered as a corresponding element. |
similarity:diff_intercept:RT | float | 1 | | Factor for RT position used to balance the influence of RT and m/z deviations |
similarity:diff_intercept:MZ | float | 0.01 | | Factor for m/z position used to balance the influence of RT and m/z deviations |