00001 // -*- Mode: C++; tab-width: 2; -*- 00002 // vi: set ts=2: 00003 // 00004 // -------------------------------------------------------------------------- 00005 // OpenMS Mass Spectrometry Framework 00006 // -------------------------------------------------------------------------- 00007 // Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert 00008 // 00009 // This library is free software; you can redistribute it and/or 00010 // modify it under the terms of the GNU Lesser General Public 00011 // License as published by the Free Software Foundation; either 00012 // version 2.1 of the License, or (at your option) any later version. 00013 // 00014 // This library is distributed in the hope that it will be useful, 00015 // but WITHOUT ANY WARRANTY; without even the implied warranty of 00016 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU 00017 // Lesser General Public License for more details. 00018 // 00019 // You should have received a copy of the GNU Lesser General Public 00020 // License along with this library; if not, write to the Free Software 00021 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00022 // 00023 // -------------------------------------------------------------------------- 00024 // $Maintainer: Andreas Bertsch $ 00025 // -------------------------------------------------------------------------- 00026 // 00027 #ifndef OPENMS_COMPARISON_SPECTRA_SPECTRUMALIGNMENT_H 00028 #define OPENMS_COMPARISON_SPECTRA_SPECTRUMALIGNMENT_H 00029 00030 #include <OpenMS/KERNEL/StandardTypes.h> 00031 #include <OpenMS/CONCEPT/FactoryProduct.h> 00032 00033 #include <vector> 00034 #include <utility> 00035 00036 namespace OpenMS 00037 { 00038 00047 class SpectrumAlignment : public FactoryProduct 00048 { 00049 public: 00050 00051 // @name Constructors and Destructors 00052 // @{ 00054 SpectrumAlignment(); 00055 00057 SpectrumAlignment(const SpectrumAlignment& source); 00058 00060 virtual ~SpectrumAlignment(); 00061 // @} 00062 00063 // @name Operators 00064 // @{ 00066 SpectrumAlignment& operator = (const SpectrumAlignment& source); 00067 // @} 00068 00069 // @name Accessors 00070 // @{ 00072 00074 static const String getProductName() 00075 { 00076 return "SpectrumAlignment"; 00077 } 00078 00079 //template <typename SpectrumType> void getSpectrumAlignment(std::vector<std::pair<UInt, UInt> >& alignment, const SpectrumType& s1, const SpectrumType& s2) const; 00080 00081 // TODO code from this method into template method above and this method should simply call the method above 00082 void getSpectrumAlignment(std::vector<std::pair<UInt, UInt> >& alignment, const PeakSpectrum& s1, const PeakSpectrum& s2) const; 00083 // @} 00084 00085 }; 00086 00087 } 00088 #endif //OPENMS_COMPARISON_SPECTRA_SPECTRUMALIGNMENT_H
Generated Tue Apr 1 15:36:38 2008 -- using doxygen 1.5.4 | OpenMS / TOPP 1.1 |