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gaussDF_() :
FeatureFinderAlgorithmPicked
gaussF_() :
FeatureFinderAlgorithmPicked
gaussFDF_() :
FeatureFinderAlgorithmPicked
GaussFilter() :
GaussFilter
GaussFitter1D() :
GaussFitter1D
GaussModel() :
GaussModel
generateTrieDB() :
InspectOutfile
get() :
Date
,
DateTime
,
HashMap
get2DData() :
MSExperiment
getAAAfter() :
PeptideHit
getAABefore() :
PeptideHit
getACAndACType() :
InspectOutfile
,
SequestOutfile
getAcceptableAbsolute() :
FuzzyStringComparator
getAcceptableRelative() :
FuzzyStringComparator
getAccession() :
ProteinHit
getAccuracy() :
MassAnalyzer
getAcquisitionInfo() :
SpectrumSettings
getAcquisitionMode() :
IonDetector
getActionMode() :
SpectrumCanvas
,
SpectrumWidget
getActivationEnergy() :
Precursor
getActivationEnergyUnit() :
Precursor
getActivationMethod() :
Precursor
getADCSamplingFrequency() :
IonDetector
getAddAverageWeight() :
ResidueModification
getAddFormula() :
ResidueModification
getAddMonoWeight() :
ResidueModification
getAdminData_() :
ANDIHandler
getAffectedAminoAcids() :
Modification
getAIonToFull() :
Residue
getAIonToFullAverageWeight() :
Residue
getAIonToFullMonoWeight() :
Residue
getAlignmentTree() :
BaseAlignment
,
StarAlignment
getArea() :
PickedPeak1D
getAtomicNumber() :
Element
getAtomicNumbers() :
ElementDB
getAutoId() :
DBConnection
getAverageWeight() :
AASequence
,
Element
,
EmpiricalFormula
,
Residue
getAveragine() :
IsotopeWavelet
getAvgMZ() :
FeatureFinderAlgorithmPicked::MassTrace
getAvIntens_() :
IsotopeWaveletTransform
getAvMZSpacing_() :
IsotopeWaveletTransform
getAxisMaximum() :
AxisWidget
getAxisMinimum() :
AxisWidget
getBackboneBasicityLeft() :
Residue
getBackboneBasicityRight() :
Residue
getBaseContainer() :
DPeakConstReferenceArray
getBaseContainerPointer() :
DPeakConstReferenceArray
getBestPairs() :
PairMatcher
getBigString() :
BigString
getBinSize() :
BinnedRep
getBinSpread() :
BinnedRep
getBIonToFull() :
Residue
getBIonToFullAverageWeight() :
Residue
getBIonToFullMonoWeight() :
Residue
getBlind() :
InspectInfile
getBoundary() :
MascotInfile
getBoundingBox() :
ConvexHull2D
getBucketSize() :
HashMap
getBucketWindowScaling() :
PoseClusteringAffineSuperimposer
getBucketWindowShift() :
PoseClusteringAffineSuperimposer
getCandidates() :
SuffixArrayPeptideFinder
getCapacity() :
HashMap
getCenter() :
BiGaussModel
,
EmgModel
,
ExtendedIsotopeModel
,
GaussModel
,
InterpolationModel
,
IsotopeModel
,
LmaGaussModel
,
LmaIsotopeModel
getCharge() :
EmpiricalFormula
,
PrecursorPeak
,
Feature
,
PickedPeak1D
,
PeptideHit
,
ExtendedIsotopeModel
,
IsotopeModel
,
LmaIsotopeModel
,
OptimizePeakDeconvolution
getChargeDeconvolution() :
ProcessingMethod
getCharges() :
MascotInfile
getChargeStateIntensities() :
ProtonDistributionModel
getChargeStateIntensities_() :
ProtonDistributionModel
getChiSquared() :
LinearRegression
getCIonToFull() :
Residue
getCIonToFullAverageWeight() :
Residue
getCIonToFullMonoWeight() :
Residue
getCleavage() :
MascotInfile
getClockTime() :
StopWatch
getClosedBoxes() :
IsotopeWaveletTransform
getClusters() :
HierarchicalClustering
getColor() :
ColorSelector
getColumn() :
HPLC
getColumns() :
SequestOutfile
getComment() :
ExperimentalSettings
,
HPLC
,
MetaInfoDescription
,
Sample
,
SampleTreatment
,
Software
,
SpectrumSettings
getCompletionTime() :
Software
getConcentration() :
Sample
getContactInfo() :
ContactPerson
getContacts() :
ExperimentalSettings
getContainer() :
IsotopeDistribution
,
DSpectrum
getConvexHull() :
Feature
getConvexhull() :
FeatureFinderAlgorithmPicked::MassTrace
getConvexHulls() :
Feature
getCPUTime() :
StopWatch
getCTerminalToFull() :
Residue
getCTerminalToFullAverageWeight() :
Residue
getCTerminalToFullMonoWeight() :
Residue
getCubicInterpolatedValue_() :
IsotopeWaveletTransform
getCurrentLayer() :
TOPPViewBase
,
SpectrumCanvas
getCurrentLayer_() :
SpectrumCanvas
getCurrentMaxIntensity() :
SpectrumCanvas
getCurrentMinIntensity() :
SpectrumCanvas
getCustomizations() :
Instrument
getCutOff() :
BaseModel
getData() :
BilinearInterpolation
,
LinearInterpolation
getDatabase() :
SequestInfile
getDataRange() :
MSExperiment
,
SpectrumCanvas
getDate() :
DateTime
,
ExperimentalSettings
getDateTime() :
ProteinIdentification
getDb() :
InspectInfile
getDB() :
MascotInfile
getDecisionValues() :
SVMWrapper
getDecodedValue_() :
MzDataHandler
getDefaultParameters() :
FeatureFinderAlgorithm
,
FeatureFinderAlgorithmSimple
,
FeatureFinderAlgorithmSimplest
getDefaults() :
DefaultParamHandler
getDeisotoping() :
ProcessingMethod
getDelAverageWeight() :
ResidueModification
getDelFormula() :
ResidueModification
getDelMonoWeight() :
ResidueModification
getDescription() :
Param
,
MetaInfoRegistry
getDiffExponent() :
SimplePairFinder
getDiffIntercept() :
DelaunayPairFinder
,
SimplePairFinder
getDigestionTime() :
Digestion
getDistance_() :
HierarchicalClustering
getDoubleOption_() :
TOPPBase
getDoubleParameter() :
SVMWrapper
getDoubleValue() :
DBConnection
getDrawMode() :
Spectrum1DCanvas
getElement() :
IndexTuple
,
ElementDB
,
EmpiricalFormula
,
ElementNotFound
getElementBucketWindow() :
PoseClusteringShiftSuperimposer
getElementDB() :
EmpiricalFormula
getElementIndex() :
IndexTuple
getElementMap() :
BasePairFinder
,
BasePairwiseMapMatcher
,
BaseSuperimposer
getElementMapVector() :
BaseAlignment
getElementPairs() :
BaseMapMatcher
,
BasePairFinder
,
BasePairwiseMapMatcher
getEluents() :
Gradient
getEmail() :
ContactPerson
getEntry() :
Param
getEntry_() :
Param
getEnzyme() :
EnzymaticDigestion
,
InspectInfile
,
Digestion
getEnzymeInfo_() :
SequestInfile
getEnzymeInfoAsString() :
SequestInfile
getEnzymeName() :
SequestInfile
getEnzymeNumber() :
SequestInfile
getExperiment() :
InspectOutfile
getExperimentalSettings() :
MSExperiment
getFactory() :
SingletonRegistry
getFastaFile() :
EdwardsLippertIterator
,
PepIterator
,
TrypticIterator
,
FastaIterator
,
FastaIteratorIntern
getFeatureMap() :
FeatureDecharger
getFeatureNumber() :
Spectrum2DGoToDialog
getFeatures() :
ConsensusFeature
getFile() :
Base
getFilename() :
FileNotFound
,
FileNotReadable
,
FileEmpty
,
UnableToCreateFile
,
ExternalAllocatorUnique
getFilenames() :
ConsensusMap
getFileNames() :
BaseAlignment
getFileSize() :
SourceFile
getFilesize() :
ExternalAllocatorUnique
getFileType() :
SourceFile
getFinalConsensusMap() :
BaseAlignment
getFinalMSExponent() :
MassAnalyzer
getFirst() :
ElementPair
getFirstName() :
ContactPerson
getFitParameter_() :
PILISScoring
getFlag_() :
TOPPBase
getFlux() :
HPLC
getFormat() :
SaveImageDialog
getFormula() :
AASequence
,
Residue
getFormVersion() :
MascotInfile
getFunction() :
Base
getFWHM() :
PickedPeak1D
,
PeakShape
getGradient() :
HPLC
getGrid() :
BaseMapMatcher
,
BasePairwiseMapMatcher
,
MapDewarper
getGslStatus_() :
LevMarqFitter1D
getHashKey_() :
HashMap
getHits() :
ProteinIdentification
,
MascotInfile
,
PeptideIdentification
getHorizontalProjection() :
Spectrum2DWidget
getHPLC() :
ExperimentalSettings
getId() :
DBConnection
getIdentifier() :
PeptideIdentification
,
ProteinIdentification
getIndex() :
MetaInfoRegistry
getIndex_() :
BigString
getIniLocation_() :
TOPPBase
getInletType() :
IonSource
getInput() :
ToolsDialog
getInsideReferencePoint() :
LinearInterpolation
getInsideReferencePoint_0() :
BilinearInterpolation
getInsideReferencePoint_1() :
BilinearInterpolation
getInstance() :
ElementDB
,
IsotopeWavelet
getInstitution() :
ContactPerson
getInstrument() :
InspectInfile
,
MascotInfile
,
ExperimentalSettings
,
HPLC
getInstrumentData_() :
ANDIHandler
getInstrumentSettings() :
SpectrumSettings
getIntensity() :
DRawDataPoint
,
RawDataPoint1D
,
RawDataPoint2D
,
BaseModel
,
InterpolationModel
,
ProductModel
getIntensityCutoff() :
ProcessingMethod
getIntensityMode() :
SpectrumCanvas
getIntensityRange() :
PeakFileOptions
,
ConsensusFeature
,
ConsensusPeak
getIntercept() :
LinearMapping
,
LinearRegression
getInternalToFull() :
Residue
getInternalToFullAverageWeight() :
Residue
getInternalToFullMonoWeight() :
Residue
getInterpolatedValue_() :
ContinuousWaveletTransform
getInterpolation() :
InterpolationModel
getInterpolationMode() :
MultiGradient
,
MultiGradientSelector
getIntOption_() :
TOPPBase
getIntParameter() :
SVMWrapper
getIntValue() :
DBConnection
getIonCutoffPercentage() :
SequestInfile
getIonDetector() :
Instrument
getIonizationMethod() :
IonSource
getIonSeriesWeights() :
SequestInfile
getIonSource() :
Instrument
getIsolationWidth() :
MassAnalyzer
getIsotopeDistribution() :
Element
,
EmpiricalFormula
getIsotopeDistribution_() :
FeatureFinderAlgorithmPicked
getKeys() :
MetaInfo
,
MetaInfoInterface
getLabels() :
SVMWrapper
,
InspectOutfile
getLambdaL() :
IsotopeWavelet
getLambdaQ() :
IsotopeWavelet
getLastName() :
ContactPerson
getLayer() :
SpectrumCanvas
getLayer_() :
SpectrumCanvas
getLayerCount() :
SpectrumCanvas
getLayerFlag() :
SpectrumCanvas
getLCP_() :
SuffixArrayTrypticCompressed
getLeftAndRightGBValues_() :
ProtonDistributionModel
getLeftPaddingIndex() :
ContinuousWaveletTransform
getLeftSplitter() :
HistogramDialog
,
HistogramWidget
getLeftWidthParameter() :
PickedPeak1D
getLegend() :
AxisWidget
getLine() :
Base
getLogDestination() :
FuzzyStringComparator
getLossAverageWeight() :
Residue
getLossFormula() :
Residue
getLossMonoWeight() :
Residue
getLossName() :
Residue
getLower() :
LinearRegression
getLowMassIons() :
Residue
getMagneticFieldStrength() :
MassAnalyzer
getMajorRevision() :
VersionInfo
getMap() :
MapDewarper
getMapIndex() :
IndexTuple
getMappings() :
GridCell
getMappingSize() :
ExternalAllocator
getMapType() :
BaseAlignment
getMapVector() :
ConsensusMap
getMass() :
Modification
,
Sample
getMassAnalyzers() :
Instrument
getMassShift() :
Tagging
getMassType() :
MascotInfile
getMassTypeFragment() :
SequestInfile
getMassTypeParent() :
SequestInfile
getMatchPeakAllowedError() :
SequestInfile
getMatchPeakCount() :
SequestInfile
getMatchPeakTolerance() :
SequestInfile
getMax() :
IsotopeDistribution
,
RangeManager
,
Spectrum1DGoToDialog
getMaxAAPerModPerPeptide() :
SequestInfile
getMaxAbsError() :
OptimizePick
,
TwoDOptimization
getMaxCharge() :
IsotopeWavelet
getMaxInt() :
RangeManager
getMaxIntensity() :
SpectrumCanvas
getMaxInternalCleavageSites() :
SequestInfile
getMaxIsotope() :
IsotopeDistribution
getMaxIterations() :
TwoDOptimization
getMaxModificationMasses() :
ModifierRep
getMaxModsPerPeptide() :
SequestInfile
getMaxMZ() :
MSExperiment
,
Spectrum2DGoToDialog
getMaxPairDistance() :
DelaunayPairFinder
getMaxPeakDistance() :
TwoDOptimization
getMaxPosition_() :
PeakPickerCWT
getMaxPTMsize() :
InspectInfile
getMaxRelError() :
OptimizePick
,
TwoDOptimization
getMaxRT() :
MSExperiment
,
Spectrum2DGoToDialog
getMeanRes() :
LinearRegression
getMessage() :
Base
getMetadataOnly() :
PeakFileOptions
getMetaInfoDescriptions() :
SpectrumSettings
getMetaValue() :
MetaInfoInterface
getMethodOfCombination() :
AcquisitionInfo
getMicroSeconds() :
PreciseTime
getMin() :
IsotopeDistribution
,
RangeManager
,
Spectrum1DGoToDialog
getMinDistance_() :
HierarchicalClustering
getMinInt() :
RangeManager
getMinIntensity() :
SpectrumCanvas
getMinMZ() :
MSExperiment
,
Spectrum2DGoToDialog
getMinorRevision() :
VersionInfo
getMinQuality() :
BaseMapMatcher
getMinRT() :
MSExperiment
,
Spectrum2DGoToDialog
getMissedCleavages() :
EnzymaticDigestion
,
MascotInfile
getML1s() :
TOFCalibration
getML2s() :
TOFCalibration
getML3s() :
TOFCalibration
getMmapHandle() :
ExternalAllocatorUnique
getModel() :
Instrument
,
ProductModel
getModelDescription() :
Feature
getModification() :
Residue
,
ResidueDB
getModificationOutputMethod() :
SuffixArrayPeptideFinder
getModifications() :
ResidueDB
,
InspectInfile
,
MascotInfile
,
PepNovoInfile
,
SequestInfile
getModificationsForMass() :
ModifierRep
getModificationsPerPeptide() :
InspectInfile
getModificationTable() :
ModifierRep
getMonoisotopicPeaks() :
InternalCalibration
getMonoisotopicPeaks_() :
InternalCalibration
,
TOFCalibration
getMonoWeight() :
AASequence
,
Element
,
EmpiricalFormula
,
Residue
getMower() :
OpenDialog
getMSLevel() :
DSpectrum
getMSLevels() :
PeakFileOptions
,
MSExperiment
getMulticharge() :
InspectInfile
getMZ() :
RawDataPoint1D
,
RawDataPoint2D
getMzBucketSize() :
PoseClusteringAffineSuperimposer
getMZRange() :
PeakFileOptions
getMzRangeStart() :
InstrumentSettings
getMzRangeStop() :
InstrumentSettings
getMZTolerance() :
TwoDOptimization
getName() :
EdwardsLippertIterator
,
EdwardsLippertIteratorTryptic
,
Element
,
Residue
,
ResidueModification
,
TrypticIterator
,
Base
,
DefaultParamHandler
,
Param::ParamIterator
,
FastaIterator
,
FastaIteratorIntern
,
DSpectrum
,
Instrument
,
MetaInfoDescription
,
MetaInfoRegistry
,
Sample
,
Software
,
ModelDescription
getNameOfFile() :
SourceFile
getNamePrefix() :
ResidueModification
getNames() :
ElementDB
,
OpenDialog
getNearBys_() :
IsotopeWaveletTransform
getNeutralLosses() :
AASequence
getNeutralLossesForIons() :
SequestInfile
getNextfree() :
ExternalAllocatorUnique
getNextMz() :
FeaFiModule
getNextRt() :
FeaFiModule
getNextSep_() :
SuffixArrayTrypticCompressed
getNextSpectrum_() :
MascotInfile
getNonReferencingHits() :
PeptideIdentification
getNormalizeXcorr() :
SequestInfile
getNTerminalToFull() :
Residue
getNTerminalToFullAverageWeight() :
Residue
getNTerminalToFullMonoWeight() :
Residue
getNucleotideReadingFrame() :
SequestInfile
getNumber() :
Acquisition
,
Sample
getNumberBuckets() :
BasePairwiseMapMatcher
getNumberIterations() :
OptimizePick
getNumberOf() :
EmpiricalFormula
getNumberOfAtoms() :
EmpiricalFormula
getNumberOfEnclosedPoints_() :
SVMWrapper
getNumberOfModifications() :
ModifierRep
,
SuffixArray
,
SuffixArrayPeptideFinder
,
SuffixArraySeqan
,
SuffixArrayTrypticCompressed
getNumberOfPeaks_() :
OptimizePeakDeconvolution
,
PeakPickerCWT
getNumberOfResidueModifications() :
ResidueDB
getNumberOfResidues() :
ResidueDB
getOffset() :
LinearInterpolation
,
IsotopeModel
,
LmaIsotopeModel
,
ExtendedIsotopeModel
getOffset_0() :
BilinearInterpolation
getOffset_1() :
BilinearInterpolation
getOneLetterCode() :
Residue
getOptions() :
DBAdapter
,
DTA2DFile
,
FeatureXMLFile
,
FileHandler
,
MzDataFile
,
MzXMLFile
,
FileHandler
getOrganism() :
Sample
getOutput() :
ToolsDialog
getOutputLines() :
SequestInfile
getOutsideReferencePoint() :
LinearInterpolation
getOutsideReferencePoint_0() :
BilinearInterpolation
getOutsideReferencePoint_1() :
BilinearInterpolation
getOverallQuality() :
Feature
getPairMinQuality() :
SimplePairFinder
getParam() :
ModelDescription
getParam_() :
TOPPBase
getParamAsBool_() :
TOPPBase
getParamAsDouble_() :
TOPPBase
getParamAsInt_() :
TOPPBase
getParamAsString_() :
TOPPBase
getParameters() :
DefaultParamHandler
,
FeatureFinder
getParentmz() :
BinnedRep
getPartialSequence() :
SequestInfile
getPathToFile() :
SourceFile
getPeakArea_() :
PeakPickerCWT
getPeakCentroid_() :
PeakPickerCWT
getPeakCount() :
FeatureFinderAlgorithmPicked::MassTraces
getPeakCutOff_() :
IsotopeWaveletTransform
getPeakEndPoints_() :
PeakPickerCWT
getPeakFlag() :
FeatureFinder
getPeakIntensity() :
FeaFiModule
getPeakMap() :
SpectrumCheapDPCorr
getPeakMassTolerance() :
InspectInfile
,
SequestInfile
,
MascotInfile
getPeakMz() :
FeaFiModule
getPeakRt() :
FeaFiModule
getPeaks() :
ConsensusPeak
,
InternalCalibration
getPeakShape() :
PickedPeak1D
getPenalties() :
OptimizePeakDeconvolution
,
OptimizePick
,
TwoDOptimization
getPeptide() :
BigString
getPeptideIdentifications() :
Feature
,
SpectrumSettings
getPeptideMassUnit() :
SequestInfile
getPercentage() :
Gradient
getPercentages() :
Gradient
getPersistenceId() :
PersistentObject
getPh() :
Digestion
getPiValue() :
Residue
getPka() :
Residue
getPkb() :
Residue
getPkc() :
Residue
getPoints() :
ConvexHull2D
getPolarity() :
InstrumentSettings
,
IonSource
getPos() :
RawDataPoint1D
getPosition() :
PoseClusteringShiftSuperimposer::Shift
,
DRawDataPoint
,
RawDataPoint1D
,
RawDataPoint2D
,
AveragePosition
,
DRawDataPoint
,
RawDataPoint2D
getPositionRange() :
ConsensusFeature
,
ConsensusPeak
getPrecision() :
DelaunayPairFinder
getPrecursor() :
SpectrumSettings
getPrecursorMassTolerance() :
InspectInfile
,
MascotInfile
,
SequestInfile
getPrecursorPeak() :
DSpectrum
getPrecursorPeakCharge() :
BinnedRep
getPrecursorRTandMZ() :
InspectOutfile
getPrecursorSpectrum() :
MSExperiment
getPref_() :
OpenDialog
getPrefAsInt_() :
OpenDialog
getPrefix() :
AASequence
getPressure() :
HPLC
getPrevMz() :
FeaFiModule
getPrevRt() :
FeaFiModule
getPrintDuplicateReferences() :
SequestInfile
getProcessingMethod() :
ExperimentalSettings
getProductName() :
PeakMarker
,
IsotopeModel
,
EmgModel
,
FeatureFinderAlgorithmSimple
,
SqrtMower
,
LmaIsotopeModel
,
DelaunayPairFinder
,
ThresholdMower
,
GaussModel
,
FeatureFinderAlgorithmSimplest
,
PoseClusteringAffineSuperimposer
,
ExtendedIsotopeFitter1D
,
EmgFitter1D
,
PoseClusteringShiftSuperimposer
,
PairMatcher
,
NeutralLossMarker
,
PreprocessingFunctor
,
BinnedRepCompareFunctor
,
BinnedRepMutualInformation
,
BinnedRepSharedPeakCount
,
NeutralLossDiffFilter
,
IsotopeMarker
,
BinnedRepSpectrumContrastAngle
,
FilterFunctor
,
ComplementFilter
,
BinnedRepSumAgreeingIntensities
,
PeakSpectrumCompareFunctor
,
SpectrumAlignment
,
NLargest
,
ParentPeakMower
,
SpectrumCheapDPCorr
,
ZhangSimilarityScore
,
Normalizer
,
ComplementMarker
,
IntensityBalanceFilter
,
IsotopeDiffFilter
,
MarkerMower
,
ParentFilter
,
PeakDensityFilter
,
GoodDiffFilter
,
TICFilter
,
WindowMower
,
BiGaussFitter1D
,
BernNorm
,
SpectrumPrecursorComparator
,
FeatureFinderAlgorithmPicked
,
SpectrumAlignmentScore
,
PoseClusteringPairwiseMapMatcher
,
LmaGaussModel
,
LmaIsotopeFitter1D
,
SimplePairFinder
,
BiGaussModel
,
Scaler
,
ExtendedIsotopeModel
,
GaussFitter1D
,
LmaGaussFitter1D
,
ProductModel
,
IsotopeFitter1D
getProteinAccessions() :
PeptideHit
getProteinIdentifications() :
ExperimentalSettings
getProteinMassFilter() :
SequestInfile
getProtonAffinity_() :
ProtonDistributionModel
getProtonDistribution() :
ProtonDistributionModel
getPValue() :
SVMWrapper
getQuality() :
ElementPair
,
PoseClusteringShiftSuperimposer::Shift
,
ElementPair
,
Feature
,
PoseClusteringShiftSuperimposer::Shift
getRank() :
PeptideHit
,
ProteinHit
getRawPerScan_() :
ANDIHandler
getReagentName() :
Modification
getReferenceMapIndex() :
StarAlignment
getReferencingHits() :
PeptideIdentification
getReflectronState() :
MassAnalyzer
getRegionEndpoints_() :
TwoDOptimization
getRemovePrecursorNearPeaks() :
SequestInfile
getResidue() :
AASequence
,
ResidueDB
getResidueDB_() :
AASequence
getResidues() :
ResidueDB
getResiduesInUpperCase() :
SequestInfile
getResolution() :
MassAnalyzer
,
IonDetector
getResolutionMethod() :
MassAnalyzer
getResolutionType() :
MassAnalyzer
getRightPaddingIndex() :
ContinuousWaveletTransform
getRightSplitter() :
HistogramWidget
,
HistogramDialog
getRightWidthParameter() :
PickedPeak1D
getRSD() :
LinearRegression
getRSquared() :
LinearRegression
getRT() :
DSpectrum
,
RawDataPoint2D
,
BinnedRep
,
AreaIterator
getRTBounds() :
FeatureFinderAlgorithmPicked::MassTraces
getRTRange() :
PeakFileOptions
getRValue() :
PickedPeak1D
getSample() :
ExperimentalSettings
getSampleData_() :
ANDIHandler
getSamples() :
BaseModel
,
InterpolationModel
,
ProductModel
,
BaseModel
getScale() :
LinearInterpolation
,
ProductModel
,
ContinuousWaveletTransform
getScale_0() :
BilinearInterpolation
getScale_1() :
BilinearInterpolation
getScalingBucketSize() :
PoseClusteringAffineSuperimposer
getScalingFactor() :
InterpolationModel
getScanDirection() :
MassAnalyzer
getScanFunction() :
MassAnalyzer
getScanLaw() :
MassAnalyzer
getScanMode() :
InstrumentSettings
getScanRate() :
MassAnalyzer
getScanTime() :
MassAnalyzer
getScore() :
PILISScoring
,
ProteinHit
,
PeptideHit
getScore_() :
PILISScoring
getScores() :
PILISScoring
getScoreType() :
ProteinIdentification
,
PeptideIdentification
getSdIntens_() :
IsotopeWaveletTransform
getSearchEngine() :
ProteinIdentification
getSearchEngineAndVersion() :
PepNovoOutfile
,
InspectOutfile
getSearchEngineVersion() :
ProteinIdentification
getSearchParameters() :
ProteinIdentification
getSearchType() :
MascotInfile
getSecond() :
ElementPair
getSeconds() :
PreciseTime
getSectionDescription() :
Param
getSelectedPeaks() :
Spectrum1DCanvas
getSeparator() :
BigString
getSequence() :
PeptideHit
,
ProteinHit
getSequenceHeaderFilter() :
SequestInfile
getSequences() :
SequestOutfile
,
InspectOutfile
getSha1() :
SourceFile
getShiftBucketSize() :
PoseClusteringAffineSuperimposer
,
PoseClusteringShiftSuperimposer
getShiftBucketWindow() :
PoseClusteringShiftSuperimposer
getShortenedNumber_() :
AxisWidget
getShortName() :
Residue
,
ResidueModification
getShowFragmentIons() :
SequestInfile
getSideChainBasicity() :
Residue
getSignal() :
ContinuousWaveletTransform
getSignalLength() :
ContinuousWaveletTransform
getSignalToNoise() :
SignalToNoiseEstimator
getSignificanceBorders() :
SVMWrapper
getSignificanceThreshold() :
ProteinIdentification
,
PeptideIdentification
getSize() :
MSExperiment
,
HashMap
,
ContinuousWaveletTransform
getSlope() :
LinearMapping
,
LinearRegression
getSN() :
PickedPeak1D
getSnapFactor() :
SpectrumCanvas
getSoftware() :
ExperimentalSettings
getSource() :
OpenDialog
getSourceFile() :
SpectrumSettings
,
MetaInfoDescription
,
SpectrumSettings
,
ExperimentalSettings
getSpacing() :
ContinuousWaveletTransform
getSpecificityType() :
Modification
getSpectra() :
InspectInfile
getSpectrum() :
PepIterator
,
FastaIteratorIntern
,
FastaIterator
,
EdwardsLippertIterator
,
TrypticIterator
,
TheoreticalSpectrumGenerator
getSpectrumAlignment() :
SpectrumAlignment
getSpectrumParameters_() :
TOPPViewBase
getSpectrumType() :
ProcessingMethod
getSpectrumWidget() :
SpectrumCanvas
getStandDevRes() :
LinearRegression
getStandErrSlope() :
LinearRegression
getState() :
Sample
getString() :
EmpiricalFormula
getStringOption_() :
TOPPBase
getStringValue() :
DBConnection
getSubsamples() :
Sample
getSubsectionDefaults_() :
TOPPBase
getSubsections() :
DefaultParamHandler
getSubsequence() :
AASequence
getSuffix() :
AASequence
getSurvivalFunction_() :
PILISScoring
getSVCProbabilities() :
SVMWrapper
getSVRProbability() :
SVMWrapper
getSwapFileHandle() :
File
getSymbol() :
Element
getSymbols() :
ElementDB
getSymmetricMeasure() :
PickedPeak1D
,
PeakShape
getSynonyms() :
ResidueModification
,
Residue
getSystemTime() :
StopWatch
getTableSteps() :
IsotopeWavelet
getTagCount() :
InspectInfile
getTags() :
SuffixArrayTrypticCompressed
,
SuffixArrayPeptideFinder
,
SuffixArray
,
SuffixArraySeqan
getTandemScanMethod() :
MassAnalyzer
getTaxonomy() :
MascotInfile
getTemperature() :
Digestion
,
HPLC
getTestData_() :
ANDIHandler
getTheoreticalMax() :
FeatureFinderAlgorithmPicked::MassTraces
getThreeLetterCode() :
Residue
getTime() :
TimeStamp
,
DateTime
getTimepoints() :
Gradient
getTOFTotalPathLength() :
MassAnalyzer
getTolerance() :
SuffixArraySeqan
,
SuffixArray
,
SuffixArrayTrypticCompressed
,
TrypticIterator
,
FastaIterator
,
EdwardsLippertIterator
,
PepIterator
,
SuffixArrayPeptideFinder
,
FastaIteratorIntern
getTool() :
ToolsDialog
getTotalmappingsize() :
ExternalAllocatorUnique
getTrace() :
Param::ParamIterator
getTransformation() :
BasePairFinder
,
BaseSuperimposer
getTransformationVector() :
BaseAlignment
getTransformedPosition() :
IndexTuple
getTransforms() :
IsotopeWaveletTransform
getTreatment() :
Sample
getTValue() :
LinearRegression
getType() :
MassAnalyzer
,
IonDetector
,
SampleTreatment
,
BaseVisualizer
,
SpectrumSettings
,
ExperimentalSettings
getTypeByContent() :
FileHandler
getTypeByFileName() :
FileHandler
getUID() :
UniqueIdGenerator
getUniqueName() :
File
getUnit() :
MetaInfoRegistry
getUnmodifiedName() :
Residue
getUpper() :
LinearRegression
getUserTime() :
StopWatch
getUseTags() :
SuffixArrayPeptideFinder
,
SuffixArray
,
SuffixArrayTrypticCompressed
,
SuffixArraySeqan
getValidResidues() :
ResidueModification
getValue() :
Param
,
Matrix
,
MetaInfo
getValueByLambda() :
IsotopeWavelet
getValueByLambdaExtrapol() :
IsotopeWavelet
getValueByMass() :
IsotopeWavelet
getVariableModifications() :
MascotInfile
getVariant() :
Tagging
getVendor() :
Instrument
getVerboseLevel() :
FuzzyStringComparator
getVersion() :
XMLFile
,
VersionInfo
,
Software
getVersionAndTime() :
VersionInfo
getVerticalProjection() :
Spectrum2DWidget
getVisibleArea() :
SpectrumCanvas
getVolume() :
Sample
getWantedRecords() :
InspectOutfile
getWavelet() :
ContinuousWaveletTransform
getWeight() :
AveragePosition
getWindowLength() :
InternalCalibration
getWindowSize() :
Precursor
getWriteSupplementalData() :
PeakFileOptions
getX() :
DPosition
getXIntercept() :
LinearRegression
getXIonToFull() :
Residue
getXIonToFullAverageWeight() :
Residue
getXIonToFullMonoWeight() :
Residue
getXSize() :
SaveImageDialog
getY() :
DPosition
getYIonToFull() :
Residue
getYIonToFullAverageWeight() :
Residue
getYIonToFullMonoWeight() :
Residue
getYSize() :
SaveImageDialog
getZIonToFull() :
Residue
getZIonToFullAverageWeight() :
Residue
getZIonToFullMonoWeight() :
Residue
GlobalExceptionHandler() :
GlobalExceptionHandler
goNext() :
SuffixArraySeqan
goNextSubTree() :
SuffixArraySeqan
GoodDiffFilter() :
GoodDiffFilter
gotoDialog() :
TOPPViewBase
goToNextAA_() :
EdwardsLippertIterator
,
TrypticIterator
gradient() :
MultiGradientSelector
Gradient() :
Gradient
gradient() :
MultiGradientSelector
GradientVisualizer() :
GradientVisualizer
Grid() :
Grid
GridCell() :
GridCell
GridFile() :
GridFile
GridHandler() :
GridHandler
gridLines() :
AxisWidget
gridLinesShown() :
SpectrumCanvas
Group() :
Group
Generated Tue Apr 1 15:36:41 2008 -- using doxygen 1.5.4
OpenMS / TOPP 1.1