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SuffixArrayTrypticCompressed Member List

This is the complete list of members for SuffixArrayTrypticCompressed, including all inherited members.

findFirst_(const std::vector< double > &spec, double &m)SuffixArrayTrypticCompressed [protected]
findFirst_(const std::vector< double > &spec, double &m, int start, int end)SuffixArrayTrypticCompressed [protected]
findSpec(std::vector< std::vector< std::pair< std::pair< int, int >, float > > > &candidates, const std::vector< double > &spec)SuffixArrayTrypticCompressed [virtual]
getLCP_(const std::pair< int, int > &last_point, const std::pair< int, int > &current_point)SuffixArrayTrypticCompressed [protected]
getNextSep_(const int p) const SuffixArrayTrypticCompressed [protected]
getNumberOfModifications()SuffixArrayTrypticCompressed [virtual]
getTags()SuffixArrayTrypticCompressed [virtual]
getTolerance() const SuffixArrayTrypticCompressed [virtual]
getUseTags()SuffixArrayTrypticCompressed [virtual]
hasMoreOutgoings_(int start_index, int stop_index, int walked_in)SuffixArrayTrypticCompressed [protected]
indices_SuffixArrayTrypticCompressed [protected]
isDigestingEnd(const char aa1, const char aa2) const SuffixArrayTrypticCompressed [virtual]
lcp_SuffixArrayTrypticCompressed [protected]
masse_SuffixArrayTrypticCompressed [protected]
number_of_modifications_SuffixArrayTrypticCompressed [protected]
open(const String &file_name)SuffixArrayTrypticCompressed [virtual]
parseTree_(int start_index, int stop_index, int depth, int walked_in, int edge_len, std::vector< std::pair< int, int > > &out_number, std::vector< std::pair< int, int > > &edge_length, std::vector< int > &leafe_depth)SuffixArrayTrypticCompressed [protected]
printStatistic()SuffixArrayTrypticCompressed [virtual]
progress_SuffixArrayTrypticCompressed [protected]
s_SuffixArrayTrypticCompressed [protected]
save(const String &file_name)SuffixArrayTrypticCompressed [virtual]
setNumberOfModifications(unsigned int number_of_mods)SuffixArrayTrypticCompressed [virtual]
setTags(const std::vector< String > &tags)SuffixArrayTrypticCompressed [virtual]
setTolerance(double t)SuffixArrayTrypticCompressed [virtual]
setUseTags(bool use_tags)SuffixArrayTrypticCompressed [virtual]
skip_SuffixArrayTrypticCompressed [protected]
SuffixArray(const String &st, const String &sa_file_name)SuffixArray
SuffixArray(const SuffixArray &sa)SuffixArray
SuffixArray()SuffixArray
SuffixArrayTrypticCompressed(const String &st, const String &sa_file_name)SuffixArrayTrypticCompressed
SuffixArrayTrypticCompressed(const SuffixArrayTrypticCompressed &sa)SuffixArrayTrypticCompressed
SuffixArrayTrypticCompressed()SuffixArrayTrypticCompressed [protected]
tags_SuffixArrayTrypticCompressed [protected]
tol_SuffixArrayTrypticCompressed [protected]
toString()SuffixArrayTrypticCompressed [virtual]
use_tags_SuffixArrayTrypticCompressed [protected]
~SuffixArray()=0SuffixArray [pure virtual]
~SuffixArrayTrypticCompressed()SuffixArrayTrypticCompressed [virtual]


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