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PeakFileOptions.h (Maintainer: Marc Sturm)

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00001 // -*- Mode: C++; tab-width: 2; -*-
00002 // vi: set ts=2:
00003 //
00004 // --------------------------------------------------------------------------
00005 //                   OpenMS Mass Spectrometry Framework
00006 // --------------------------------------------------------------------------
00007 //  Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert
00008 //
00009 //  This library is free software; you can redistribute it and/or
00010 //  modify it under the terms of the GNU Lesser General Public
00011 //  License as published by the Free Software Foundation; either
00012 //  version 2.1 of the License, or (at your option) any later version.
00013 //
00014 //  This library is distributed in the hope that it will be useful,
00015 //  but WITHOUT ANY WARRANTY; without even the implied warranty of
00016 //  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
00017 //  Lesser General Public License for more details.
00018 //
00019 //  You should have received a copy of the GNU Lesser General Public
00020 //  License along with this library; if not, write to the Free Software
00021 //  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
00022 //
00023 // --------------------------------------------------------------------------
00024 // $Maintainer: Marc Sturm $
00025 // --------------------------------------------------------------------------
00026 
00027 #ifndef OPENMS_FORMAT_PEAKFILEOPTIONS_H
00028 #define OPENMS_FORMAT_PEAKFILEOPTIONS_H
00029 
00030 #include <OpenMS/DATASTRUCTURES/DRange.h>
00031 
00032 #include <vector>
00033 
00034 namespace OpenMS
00035 {
00039   class PeakFileOptions
00040   {
00041   public:
00042     typedef std::vector<int> MSLevels;
00043     
00045     PeakFileOptions();
00047     ~PeakFileOptions();
00048 
00050     void setMetadataOnly(bool only);
00052     bool getMetadataOnly() const;
00053     
00055     void setWriteSupplementalData(bool write);
00057     bool getWriteSupplementalData() const;
00058     
00060     void setRTRange(const DRange<1>& range);
00062     bool hasRTRange() const;
00064     const DRange<1>& getRTRange() const;
00065     
00067     void setMZRange(const DRange<1>& range);
00069     bool hasMZRange() const;
00071     const DRange<1>& getMZRange() const;
00072     
00074     void setIntensityRange(const DRange<1>& range);
00076     bool hasIntensityRange() const;
00078     const DRange<1>& getIntensityRange() const;
00079     
00081     void setMSLevels(const MSLevels& levels);
00083     void addMSLevel(int level);
00085     void clearMSLevels();
00087     bool hasMSLevels() const;
00089     bool containsMSLevel(int level) const;
00091     const MSLevels& getMSLevels() const;
00092 
00093   private:
00094     bool metadata_only_;
00095     bool write_supplemental_data_;
00096     bool has_rt_range_;
00097     bool has_mz_range_;
00098     bool has_intensity_range_;
00099     DRange<1> rt_range_;
00100     DRange<1> mz_range_;
00101     DRange<1> intensity_range_;
00102     MSLevels ms_levels_;
00103   };
00104 
00105 } // namespace OpenMS
00106 
00107 #endif // OPENMS_FORMAT_PEAKFILEOPTIONS_H

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