00001 // -*- Mode: C++; tab-width: 2; -*- 00002 // vi: set ts=2: 00003 // 00004 // -------------------------------------------------------------------------- 00005 // OpenMS Mass Spectrometry Framework 00006 // -------------------------------------------------------------------------- 00007 // Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert 00008 // 00009 // This library is free software; you can redistribute it and/or 00010 // modify it under the terms of the GNU Lesser General Public 00011 // License as published by the Free Software Foundation; either 00012 // version 2.1 of the License, or (at your option) any later version. 00013 // 00014 // This library is distributed in the hope that it will be useful, 00015 // but WITHOUT ANY WARRANTY; without even the implied warranty of 00016 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU 00017 // Lesser General Public License for more details. 00018 // 00019 // You should have received a copy of the GNU Lesser General Public 00020 // License along with this library; if not, write to the Free Software 00021 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00022 // 00023 // -------------------------------------------------------------------------- 00024 // $Maintainer: Nico Pfeifer $ 00025 // -------------------------------------------------------------------------- 00026 00027 #ifndef OPENMS_METADATA_PROTEINHIT_H 00028 #define OPENMS_METADATA_PROTEINHIT_H 00029 00030 #include <vector> 00031 00032 #include <OpenMS/CONCEPT/Types.h> 00033 #include <OpenMS/DATASTRUCTURES/String.h> 00034 #include <OpenMS/METADATA/MetaInfoInterface.h> 00035 00036 namespace OpenMS 00037 { 00046 class ProteinHit 00047 : public MetaInfoInterface 00048 { 00049 public: 00050 00053 00055 ProteinHit(); 00056 00058 ProteinHit(DoubleReal score, UInt rank, String accession, String sequence); 00059 00061 ProteinHit(const ProteinHit& source); 00062 00064 virtual ~ProteinHit(); 00066 00068 ProteinHit& operator=(const ProteinHit& source); 00069 00071 bool operator == (const ProteinHit& rhs) const; 00072 00074 bool operator != (const ProteinHit& rhs) const; 00075 00076 00079 00081 Real getScore() const; 00082 00084 UInt getRank() const; 00085 00087 const String& getSequence() const; 00088 00090 const String& getAccession() const; 00091 00093 void setScore(DoubleReal score); 00094 00096 void setRank(UInt newrank); 00097 00099 void setSequence(const String& sequence); 00100 00102 void setAccession(const String& accession); 00104 00105 protected: 00106 Real score_; 00107 UInt rank_; 00108 String accession_; 00109 String sequence_; 00110 00111 }; 00112 00113 } // namespace OpenMS 00114 00115 #endif // OPENMS_METADATA_PROTEINHIT_H
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