#include <OpenMS/FORMAT/HANDLERS/MascotXMLHandler.h>
Public Member Functions | |
MascotXMLHandler (ProteinIdentification &protein_identification, std::vector< PeptideIdentification > &identifications, const String &filename) | |
Constructor. | |
virtual | ~MascotXMLHandler () |
Destructor. | |
virtual void | endElement (const XMLCh *const , const XMLCh *const , const XMLCh *const qname) |
Parsing method for closing tags. | |
virtual void | startElement (const XMLCh *const , const XMLCh *const , const XMLCh *const qname, const xercesc::Attributes &attributes) |
Parsing method for opening tags. | |
virtual void | characters (const XMLCh *const chars, unsigned int) |
Parsing method for character data. | |
Private Attributes | |
ProteinIdentification & | protein_identification_ |
the protein identifications | |
std::vector < PeptideIdentification > & | id_data_ |
the identifications (storing the peptide hits) | |
ProteinHit | actual_protein_hit_ |
PeptideHit | actual_peptide_hit_ |
UInt | peptide_identification_index_ |
String | tag_ |
DateTime | date_ |
String | date_time_string_ |
UInt | actual_query_ |
ProteinIdentification::SearchParameters | search_parameters_ |
String | identifier_ |
MascotXMLHandler | ( | ProteinIdentification & | protein_identification, | |
std::vector< PeptideIdentification > & | identifications, | |||
const String & | filename | |||
) |
Constructor.
virtual ~MascotXMLHandler | ( | ) | [virtual] |
Destructor.
virtual void endElement | ( | const XMLCh * | uri, | |
const XMLCh * | localname, | |||
const XMLCh *const | qname | |||
) | [virtual] |
virtual void startElement | ( | const XMLCh * | uri, | |
const XMLCh * | localname, | |||
const XMLCh *const | qname, | |||
const xercesc::Attributes & | attrs | |||
) | [virtual] |
virtual void characters | ( | const XMLCh *const | chars, | |
unsigned | length | |||
) | [virtual] |
ProteinIdentification& protein_identification_ [private] |
the protein identifications
std::vector<PeptideIdentification>& id_data_ [private] |
the identifications (storing the peptide hits)
ProteinHit actual_protein_hit_ [private] |
PeptideHit actual_peptide_hit_ [private] |
UInt peptide_identification_index_ [private] |
String date_time_string_ [private] |
UInt actual_query_ [private] |
String identifier_ [private] |
Generated Tue Apr 1 15:36:49 2008 -- using doxygen 1.5.4 | OpenMS / TOPP 1.1 |