00001 // -*- Mode: C++; tab-width: 2; -*- 00002 // vi: set ts=2: 00003 // 00004 // -------------------------------------------------------------------------- 00005 // OpenMS Mass Spectrometry Framework 00006 // -------------------------------------------------------------------------- 00007 // Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert 00008 // 00009 // This library is free software; you can redistribute it and/or 00010 // modify it under the terms of the GNU Lesser General Public 00011 // License as published by the Free Software Foundation; either 00012 // version 2.1 of the License, or (at your option) any later version. 00013 // 00014 // This library is distributed in the hope that it will be useful, 00015 // but WITHOUT ANY WARRANTY; without even the implied warranty of 00016 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU 00017 // Lesser General Public License for more details. 00018 // 00019 // You should have received a copy of the GNU Lesser General Public 00020 // License along with this library; if not, write to the Free Software 00021 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00022 // 00023 // -------------------------------------------------------------------------- 00024 // $Maintainer: Eva Lange$ 00025 // -------------------------------------------------------------------------- 00026 00027 #ifndef OPENMS_FORMAT_CONSENSUSXMLFILE_H 00028 #define OPENMS_FORMAT_CONSENSUSXMLFILE_H 00029 00030 #include <OpenMS/FORMAT/XMLFile.h> 00031 #include <OpenMS/FORMAT/HANDLERS/ConsensusXMLHandler.h> 00032 00033 namespace OpenMS 00034 { 00046 class ConsensusXMLFile 00047 : public Internal::XMLFile 00048 { 00049 public: 00051 ConsensusXMLFile(); 00053 ~ConsensusXMLFile(); 00054 00055 00057 template <typename ElementT> 00058 void load(const String& filename, ConsensusMap<ElementT>& map, bool load_element_maps = true) throw (Exception::FileNotFound, Exception::ParseError) 00059 { 00060 map.clear(); // clear map 00061 Internal::ConsensusXMLHandler< StarAlignment<ElementT> > handler(map,filename,schema_version_,load_element_maps); 00062 parse_(filename, &handler); 00063 } 00064 00066 template <typename AlignmentT> 00067 void store(const String& filename, const AlignmentT& alignment) 00068 const throw (Exception::UnableToCreateFile) 00069 { 00070 Internal::ConsensusXMLHandler<AlignmentT> handler(alignment,filename,schema_version_); 00071 save_(filename, &handler); 00072 } 00073 00074 }; 00075 } // namespace OpenMS 00076 00077 #endif // OPENMS_FOMAT_CONSENSUSXMLFILE_H
Generated Tue Apr 1 15:36:33 2008 -- using doxygen 1.5.4 | OpenMS / TOPP 1.1 |