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AASequence Member List

This is the complete list of members for AASequence, including all inherited members.

AASequence()AASequence
AASequence(const AASequence &rhs)AASequence
AASequence(const String &rhs)AASequence
AASequence(ResidueDB *res_db)AASequence
AASequence(ConstIterator begin, ConstIterator end)AASequence
begin()AASequence [inline]
begin() const AASequence [inline]
const_iterator typedefAASequence
ConstIterator typedefAASequence
custom_res_db_AASequence [protected, static]
end()AASequence [inline]
end() const AASequence [inline]
getAverageWeight(Residue::ResidueType type=Residue::Full, Int charge=0) const AASequence
getFormula(Residue::ResidueType type=Residue::Full, Int charge=0) const AASequence
getMonoWeight(Residue::ResidueType type=Residue::Full, Int charge=0) const AASequence
getNeutralLosses() const AASequence
getPrefix(UInt index) const AASequence
getResidue(Int index) const AASequence
getResidue(UInt index) const AASequence
getResidueDB_() const AASequence [protected]
getSubsequence(UInt index, UInt number) const AASequence
getSuffix(UInt index) const AASequence
has(const Residue *residue) const AASequence
has(const String &name) const AASequence
hasPrefix(const AASequence &peptide) const AASequence
hasPrefix(const String &peptide) const AASequence
hasSubsequence(const AASequence &peptide) const AASequence
hasSubsequence(const String &peptide) const AASequence
hasSuffix(const AASequence &peptide) const AASequence
hasSuffix(const String &peptide) const AASequence
iterator typedefAASequence
Iterator typedefAASequence
operator!=(const AASequence &) const AASequence
operator!=(const String &) const AASequence
operator+(const AASequence &peptide) const AASequence
operator+(const String &peptide) const AASequence
operator+=(const AASequence &)AASequence
operator+=(const String &)AASequence
operator<<(std::ostream &os, const AASequence &peptide)AASequence [friend]
operator=(const AASequence &rhs)AASequence
operator==(const AASequence &) const AASequence
operator==(const String &) const AASequence
operator>>(std::istream &is, const AASequence &peptide)AASequence [friend]
operator[](Int index) const AASequence
operator[](UInt index) const AASequence
parseString_(std::vector< const Residue * > &sequence, const String &peptide) const AASequence [protected]
peptide_AASequence [protected]
setResidueDB(ResidueDB *res_db=0)AASequence
size() const AASequence
~AASequence()AASequence [virtual]


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