00001 // -*- Mode: C++; tab-width: 2; -*- 00002 // vi: set ts=2: 00003 // 00004 // -------------------------------------------------------------------------- 00005 // OpenMS Mass Spectrometry Framework 00006 // -------------------------------------------------------------------------- 00007 // Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert 00008 // 00009 // This library is free software; you can redistribute it and/or 00010 // modify it under the terms of the GNU Lesser General Public 00011 // License as published by the Free Software Foundation; either 00012 // version 2.1 of the License, or (at your option) any later version. 00013 // 00014 // This library is distributed in the hope that it will be useful, 00015 // but WITHOUT ANY WARRANTY; without even the implied warranty of 00016 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU 00017 // Lesser General Public License for more details. 00018 // 00019 // You should have received a copy of the GNU Lesser General Public 00020 // License along with this library; if not, write to the Free Software 00021 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00022 // 00023 // -------------------------------------------------------------------------- 00024 // $Maintainer: Marc Sturm $ 00025 // -------------------------------------------------------------------------- 00026 00027 #ifndef OPENMS_METADATA_SPECTRUMSETTINGS_H 00028 #define OPENMS_METADATA_SPECTRUMSETTINGS_H 00029 00030 #include <OpenMS/DATASTRUCTURES/String.h> 00031 #include <OpenMS/METADATA/InstrumentSettings.h> 00032 #include <OpenMS/METADATA/AcquisitionInfo.h> 00033 #include <OpenMS/METADATA/MetaInfoDescription.h> 00034 #include <OpenMS/METADATA/Precursor.h> 00035 #include <OpenMS/METADATA/PeptideIdentification.h> 00036 00037 #include <map> 00038 #include <vector> 00039 00040 namespace OpenMS 00041 { 00054 class SpectrumSettings 00055 { 00056 public: 00062 enum SpectrumType {UNKNOWN, PEAKS, RAWDATA,SIZE_OF_SPECTRUMTYPE}; 00064 static const std::string NamesOfSpectrumType[SIZE_OF_SPECTRUMTYPE]; 00065 00067 SpectrumSettings(); 00069 SpectrumSettings(const SpectrumSettings& source); 00071 ~SpectrumSettings(); 00072 00073 // Assignment operator 00074 SpectrumSettings& operator= (const SpectrumSettings& source); 00075 00077 bool operator== (const SpectrumSettings& rhs) const; 00079 bool operator!= (const SpectrumSettings& rhs) const; 00080 00086 SpectrumType getType() const; 00092 void setType(SpectrumType type); 00093 00095 const String& getComment() const; 00097 void setComment(const String& comment); 00098 00100 const InstrumentSettings& getInstrumentSettings() const; 00102 InstrumentSettings& getInstrumentSettings(); 00104 void setInstrumentSettings(const InstrumentSettings& instrument_settings); 00105 00107 const AcquisitionInfo& getAcquisitionInfo() const; 00109 AcquisitionInfo& getAcquisitionInfo(); 00111 void setAcquisitionInfo(const AcquisitionInfo& acquisition_info); 00112 00114 const SourceFile& getSourceFile() const; 00116 SourceFile& getSourceFile(); 00118 void setSourceFile(const SourceFile& source_file); 00119 00121 const std::map<String,MetaInfoDescription>& getMetaInfoDescriptions() const; 00123 std::map<String,MetaInfoDescription>& getMetaInfoDescriptions(); 00125 void setMetaInfoDescriptions(const std::map<String,MetaInfoDescription>& meta_info_descriptions); 00126 00128 const Precursor& getPrecursor() const; 00130 Precursor& getPrecursor(); 00132 void setPrecursor(const Precursor& precursor); 00133 00135 const std::vector<PeptideIdentification>& getPeptideIdentifications() const; 00137 std::vector<PeptideIdentification>& getPeptideIdentifications(); 00139 void setPeptideIdentifications(const std::vector<PeptideIdentification>& identifications); 00140 00141 protected: 00142 SpectrumType type_; 00143 String comment_; 00144 InstrumentSettings instrument_settings_; 00145 SourceFile source_file_; 00146 AcquisitionInfo acquisition_info_; 00147 std::map<String,MetaInfoDescription> meta_info_descriptions_; 00148 Precursor precursor_; 00149 std::vector<PeptideIdentification> identification_; 00150 }; 00151 00153 std::ostream& operator << (std::ostream& os, const SpectrumSettings& spec); 00154 00155 } // namespace OpenMS 00156 00157 #endif // OPENMS_METADATA_SPECTRUMSETTINGS_H
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