#include <OpenMS/FORMAT/HANDLERS/OMSSAXMLHandler.h>
Public Member Functions | |
OMSSAXMLHandler (ProteinIdentification &protein_identification, std::vector< PeptideIdentification > &peptide_identifications, const String &filename) | |
Default constructor. | |
virtual | ~OMSSAXMLHandler () |
Destructor. | |
void | endElement (const XMLCh *const , const XMLCh *const , const XMLCh *const qname) |
Parsing method for closing tags. | |
void | startElement (const XMLCh *const , const XMLCh *const , const XMLCh *const qname, const xercesc::Attributes &attributes) |
Parsing method for opening tags. | |
void | characters (const XMLCh *const chars, unsigned int) |
Parsing method for character data. | |
Private Attributes | |
ProteinIdentification & | protein_identification_ |
the protein identifications | |
std::vector < PeptideIdentification > & | peptide_identifications_ |
the identifications (storing the peptide hits) | |
ProteinHit | actual_protein_hit_ |
PeptideHit | actual_peptide_hit_ |
PeptideIdentification | actual_peptide_id_ |
ProteinIdentification | actual_protein_id_ |
String | tag_ |
OMSSAXMLHandler | ( | ProteinIdentification & | protein_identification, | |
std::vector< PeptideIdentification > & | peptide_identifications, | |||
const String & | filename | |||
) |
Default constructor.
virtual ~OMSSAXMLHandler | ( | ) | [virtual] |
Destructor.
void endElement | ( | const XMLCh * | uri, | |
const XMLCh * | localname, | |||
const XMLCh *const | qname | |||
) | [virtual] |
void startElement | ( | const XMLCh * | uri, | |
const XMLCh * | localname, | |||
const XMLCh *const | qname, | |||
const xercesc::Attributes & | attrs | |||
) | [virtual] |
void characters | ( | const XMLCh *const | chars, | |
unsigned | length | |||
) | [virtual] |
ProteinIdentification& protein_identification_ [private] |
the protein identifications
std::vector<PeptideIdentification>& peptide_identifications_ [private] |
the identifications (storing the peptide hits)
ProteinHit actual_protein_hit_ [private] |
PeptideHit actual_peptide_hit_ [private] |
PeptideIdentification actual_peptide_id_ [private] |
ProteinIdentification actual_protein_id_ [private] |
Generated Tue Apr 1 15:36:49 2008 -- using doxygen 1.5.4 | OpenMS / TOPP 1.1 |