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SignalToNoiseEstimatorMeanIterative Parameters

Parameters of SignalToNoiseEstimatorMeanIterative:

NameTypeDefaultRestrictionsDescription
max_intensityint-1min: -1maximal intensity considered for histogram construction. By default, it will be calculated automatically (see auto_mode). Only provide this parameter if you know what you are doing (and change 'auto_mode' to '-1')! All intensities EQUAL/ABOVE 'max_intensity' will not be added to the histogram. If you choose 'max_intensity' too small, the noise estimate might be too small as well. If chosen too big, the bins become quite large (which you could counter by increasing 'bin_count', which increases runtime).
auto_max_stdev_factorfloat3min: 0 max: 999parameter for 'max_intensity' estimation (if 'auto_mode' == 0): mean + 'auto_max_stdev_factor' * stdev
auto_max_percentileint95min: 0 max: 100parameter for 'max_intensity' estimation (if 'auto_mode' == 1): auto_max_percentile th percentile
auto_modeint0min: -1 max: 1method to use to determine maximal intensity: -1 --> use 'max_intensity'; 0 --> 'auto_max_stdev_factor' method (default); 1 --> 'auto_max_percentile' method
win_lenfloat200min: 1window length in Thomson
bin_countint30min: 3number of bins for intensity values
stdev_mpfloat3min: 0.01 max: 999multiplier for stdev
min_required_elementsint10min: 1minimum number of elements required in a window (otherwise it is considered sparse)
noise_for_empty_windowfloat1e+20 noise value used for sparse windows

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