00001 // -*- Mode: C++; tab-width: 2; -*- 00002 // vi: set ts=2: 00003 // 00004 // -------------------------------------------------------------------------- 00005 // OpenMS Mass Spectrometry Framework 00006 // -------------------------------------------------------------------------- 00007 // Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert 00008 // 00009 // This library is free software; you can redistribute it and/or 00010 // modify it under the terms of the GNU Lesser General Public 00011 // License as published by the Free Software Foundation; either 00012 // version 2.1 of the License, or (at your option) any later version. 00013 // 00014 // This library is distributed in the hope that it will be useful, 00015 // but WITHOUT ANY WARRANTY; without even the implied warranty of 00016 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU 00017 // Lesser General Public License for more details. 00018 // 00019 // You should have received a copy of the GNU Lesser General Public 00020 // License along with this library; if not, write to the Free Software 00021 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00022 // 00023 // -------------------------------------------------------------------------- 00024 // $Maintainer: Eva Lange $ 00025 // -------------------------------------------------------------------------- 00026 00027 #ifndef OPENMS_FORMAT_FEATUREPAIRSXMLFILE_H 00028 #define OPENMS_FORMAT_FEATUREPAIRSXMLFILE_H 00029 00030 #include <OpenMS/FORMAT/XMLFile.h> 00031 #include <OpenMS/FORMAT/HANDLERS/FeaturePairsHandler.h> 00032 #include <OpenMS/KERNEL/FeatureMap.h> 00033 00034 namespace OpenMS 00035 { 00036 00046 class FeaturePairsXMLFile 00047 : public Internal::XMLFile 00048 { 00049 public: 00052 00053 FeaturePairsXMLFile(); 00055 ~FeaturePairsXMLFile(); 00057 00059 void load(String filename, std::vector< ElementPair < Feature > > & pairs) throw (Exception::FileNotFound, Exception::ParseError); 00060 00062 void store(String filename, const std::vector< ElementPair < Feature > > & pairs) const throw (Exception::UnableToCreateFile); 00063 00065 static void pairsToFeatures(const std::vector< ElementPair < Feature > >& pairs, FeatureMap<>& map); 00066 00067 }; 00068 00069 } // namespace OpenMS 00070 00071 #endif // OPENMS_FORMAT_FEATUREPAIRSXMLFILE_H
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