Name | Type | Default | Restrictions | Description |
add_isotopes | int | 0 | | If set to 1 isotope peaks of the product ion peaks are added |
max_isotope | int | 2 | | Defines the maximal isotopic peak which is added, add_isotopes must be set to 1 |
add_metainfo | int | 0 | | Adds the type of peaks as metainfo to the peaks, like y8+, [M-H2O+2H]++ |
add_losses | int | 0 | | Adds common losses to those ion expect to have them, only water and ammonia loss is considered |
add_precursor_peaks | int | 0 | | Adds peaks of the precursor to the spectrum, which happen to occur sometimes |
y_intensity | float | 1 | | Intensity of the y-ions |
b_intensity | float | 1 | | Intensity of the b-ions |
a_intensity | float | 1 | | Intensity of the a-ions |
c_intensity | float | 1 | | Intensity of the c-ions |
x_intensity | float | 1 | | Intensity of the x-ions |
z_intensity | float | 1 | | Intensity of the z-ions |
relative_loss_intensity | float | 0.1 | | Intensity of loss ions, in relation to the intact ion intensity |
precursor_intensity | float | 1 | | Intensity of the precursor peak |
precursor_H2O_intensity | float | 1 | | Intensity of the H2O loss peak of the precursor |
precursor_NH3_intensity | float | 1 | | Intensity of the NH3 loss peak of the precursor |