Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages

ConsensusXMLFile.h (Maintainer: Eva Lange)

Go to the documentation of this file.
00001 // -*- Mode: C++; tab-width: 2; -*-
00002 // vi: set ts=2:
00003 //
00004 // --------------------------------------------------------------------------
00005 //                   OpenMS Mass Spectrometry Framework
00006 // --------------------------------------------------------------------------
00007 //  Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert
00008 //
00009 //  This library is free software; you can redistribute it and/or
00010 //  modify it under the terms of the GNU Lesser General Public
00011 //  License as published by the Free Software Foundation; either
00012 //  version 2.1 of the License, or (at your option) any later version.
00013 //
00014 //  This library is distributed in the hope that it will be useful,
00015 //  but WITHOUT ANY WARRANTY; without even the implied warranty of
00016 //  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
00017 //  Lesser General Public License for more details.
00018 //
00019 //  You should have received a copy of the GNU Lesser General Public
00020 //  License along with this library; if not, write to the Free Software
00021 //  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
00022 //
00023 // --------------------------------------------------------------------------
00024 // $Maintainer: Eva Lange$
00025 // --------------------------------------------------------------------------
00026 
00027 #ifndef OPENMS_FORMAT_CONSENSUSXMLFILE_H
00028 #define OPENMS_FORMAT_CONSENSUSXMLFILE_H
00029 
00030 #include <OpenMS/FORMAT/XMLFile.h>
00031 #include <OpenMS/FORMAT/HANDLERS/ConsensusXMLHandler.h>
00032 
00033 namespace OpenMS
00034 {
00046   class ConsensusXMLFile 
00047     : public Internal::XMLFile
00048   {
00049     public:
00051       ConsensusXMLFile();
00053       ~ConsensusXMLFile();
00054 
00055 
00057       template <typename ElementT>
00058       void load(const String& filename, ConsensusMap<ElementT>& map, bool load_element_maps = true) throw (Exception::FileNotFound, Exception::ParseError)
00059       {
00060         map.clear(); // clear map
00061         Internal::ConsensusXMLHandler< StarAlignment<ElementT> > handler(map,filename,schema_version_,load_element_maps);
00062         parse_(filename, &handler);
00063       }
00064 
00066       template <typename AlignmentT>
00067       void store(const String& filename, const AlignmentT& alignment)
00068       const throw (Exception::UnableToCreateFile)
00069       {
00070         Internal::ConsensusXMLHandler<AlignmentT> handler(alignment,filename,schema_version_);
00071         save_(filename, &handler);
00072       }
00073 
00074   };
00075 } // namespace OpenMS
00076 
00077 #endif // OPENMS_FOMAT_CONSENSUSXMLFILE_H

Generated Tue Apr 1 15:36:33 2008 -- using doxygen 1.5.4 OpenMS / TOPP 1.1