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File IO
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Detailed Description

File IO classes.

This module contains all classes that are involved in file IO. Take a look at the FileHandler class!


Classes

class  ANDIFile
 File adapter for ANDI/MS files. More...
class  ConsensusXMLFile
 This class provides Input functionality for ConsensusMaps and Output functionality for StarAlignments. More...
class  DTA2DFile
 DTA2D File adapter. More...
class  DTAFile
 File adapter for DTA files. More...
class  FeaturePairsXMLFile
 This class provides Input/Output functionality for the class DFeaturePairVector. More...
class  FeatureXMLFile
 This class provides Input/Output functionality for feature maps. More...
class  FileHandler
 Facilitates file handling by file type recognition. More...
class  GridFile
 Provides Input/Output functionality for instances of class DGrid. More...
class  IdXMLFile
 Used to load and store IdXML files. More...
class  InspectInfile
 Inspect input file adapter. More...
class  InspectOutfile
 Representation of an Inspect outfile. More...
class  MascotInfile
 Mascot input file adapter. More...
class  MascotOutfile
 Representation of a Mascot output file. More...
class  MascotXMLFile
 Used to load MascotXML files. More...
class  MzDataFile
 File adapter for MzData files. More...
class  MzXMLFile
 File adapter for MzXML 2.1 files. More...
class  OMSSAXMLFile
 Used to load OMSSAXML files. More...
class  PepNovoInfile
 PepNovo input file adapter. More...
class  PepNovoOutfile
 Representation of a PepNovo output file. More...
class  PTMXMLFile
 Used to load and store PTMXML files. More...
class  SequestInfile
 Sequest input file adapter. More...
class  SequestOutfile
 Representation of a Sequest output file. More...
class  TextFile
 This class provides some basic file handling methods and facilitates reading, writing and handling text files. More...
class  XMLValidator
 Validator for XML files. More...

Functions

void load (const String &filename, ProteinIdentification &protein_identification, std::vector< PeptideIdentification > &id_data) const throw (Exception::FileNotFound, Exception::ParseError)
 loads data from a OMSSAXML file


Function Documentation

void load ( const String filename,
ProteinIdentification protein_identification,
std::vector< PeptideIdentification > &  id_data 
) const throw (Exception::FileNotFound, Exception::ParseError) [inherited]

loads data from a OMSSAXML file

Parameters:
filename the file to be loaded
protein_identification protein identifications belonging to the whole experiment
id_data the identifications with m/z and RT
This class serves to read in a OMSSAXML file. The information can be retrieved via the load function.


Generated Tue Apr 1 15:36:40 2008 -- using doxygen 1.5.4 OpenMS / TOPP 1.1