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PeakPicker.h (Maintainer: Eva Lange)

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00001 // -*- Mode: C++; tab-width: 2; -*-
00002 // vi: set ts=2:
00003 //
00004 // --------------------------------------------------------------------------
00005 //                   OpenMS Mass Spectrometry Framework
00006 // --------------------------------------------------------------------------
00007 //  Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert
00008 //
00009 //  This library is free software; you can redistribute it and/or
00010 //  modify it under the terms of the GNU Lesser General Public
00011 //  License as published by the Free Software Foundation; either
00012 //  version 2.1 of the License, or (at your option) any later version.
00013 //
00014 //  This library is distributed in the hope that it will be useful,
00015 //  but WITHOUT ANY WARRANTY; without even the implied warranty of
00016 //  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
00017 //  Lesser General Public License for more details.
00018 //
00019 //  You should have received a copy of the GNU Lesser General Public
00020 //  License along with this library; if not, write to the Free Software
00021 //  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
00022 //
00023 // --------------------------------------------------------------------------
00024 // $Maintainer: Eva Lange $
00025 // --------------------------------------------------------------------------
00026 
00027 #ifndef OPENMS_TRANSFORMATIONS_RAW2PEAK_PEAKPICKER_H
00028 #define OPENMS_TRANSFORMATIONS_RAW2PEAK_PEAKPICKER_H
00029 
00030 #include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
00031 #include <OpenMS/CONCEPT/ProgressLogger.h>
00032 
00033 #include <iostream>
00034 #include <vector>
00035 #include <math.h>
00036 
00037 
00038 namespace OpenMS
00039 {
00047   class PeakPicker
00048     : public DefaultParamHandler, 
00049       public ProgressLogger
00050   {
00051 
00052   public:
00054     PeakPicker();
00055 
00057     virtual ~PeakPicker()
00058     { 
00059     }
00060     
00061   protected:
00063     float peak_bound_;
00064 
00066     float peak_bound_ms2_level_;
00067 
00069     float signal_to_noise_;
00070 
00072     float fwhm_bound_;
00073 
00074     void updateMembers_();
00075     
00076   };
00077 
00078 }// namespace OpenMS
00079 
00080 #endif

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