00001 // -*- Mode: C++; tab-width: 2; -*- 00002 // vi: set ts=2: 00003 // 00004 // -------------------------------------------------------------------------- 00005 // OpenMS Mass Spectrometry Framework 00006 // -------------------------------------------------------------------------- 00007 // Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert 00008 // 00009 // This library is free software; you can redistribute it and/or 00010 // modify it under the terms of the GNU Lesser General Public 00011 // License as published by the Free Software Foundation; either 00012 // version 2.1 of the License, or (at your option) any later version. 00013 // 00014 // This library is distributed in the hope that it will be useful, 00015 // but WITHOUT ANY WARRANTY; without even the implied warranty of 00016 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU 00017 // Lesser General Public License for more details. 00018 // 00019 // You should have received a copy of the GNU Lesser General Public 00020 // License along with this library; if not, write to the Free Software 00021 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00022 // 00023 // -------------------------------------------------------------------------- 00024 // $Maintainer: Nico Pfeifer $ 00025 // -------------------------------------------------------------------------- 00026 00027 #ifndef OPENMS_FORMAT_HANDLERS_MASCOTXMLHANDLER_H 00028 #define OPENMS_FORMAT_HANDLERS_MASCOTXMLHANDLER_H 00029 00030 #include <OpenMS/FORMAT/HANDLERS/XMLHandler.h> 00031 #include <OpenMS/METADATA/ProteinIdentification.h> 00032 #include <OpenMS/METADATA/PeptideIdentification.h> 00033 00034 #include <vector> 00035 00036 namespace OpenMS 00037 { 00038 namespace Internal 00039 { 00044 class MascotXMLHandler: 00045 public XMLHandler 00046 { 00047 public: 00049 MascotXMLHandler(ProteinIdentification& protein_identification, std::vector<PeptideIdentification>& identifications, const String& filename); 00050 00052 virtual ~MascotXMLHandler(); 00053 00054 // Docu in base class 00055 virtual void endElement(const XMLCh* const /*uri*/, const XMLCh* const /*local_name*/, const XMLCh* const qname); 00056 00057 // Docu in base class 00058 virtual void startElement(const XMLCh* const /*uri*/, const XMLCh* const /*local_name*/, const XMLCh* const qname, const xercesc::Attributes& attributes); 00059 00060 // Docu in base class 00061 virtual void characters(const XMLCh* const chars, unsigned int /*length*/); 00062 00063 private: 00064 00065 ProteinIdentification& protein_identification_; 00066 std::vector<PeptideIdentification>& id_data_; 00067 ProteinHit actual_protein_hit_; 00068 PeptideHit actual_peptide_hit_; 00069 UInt peptide_identification_index_; 00070 String tag_; 00071 DateTime date_; 00072 String date_time_string_; 00073 UInt actual_query_; 00074 ProteinIdentification::SearchParameters search_parameters_; 00075 String identifier_; 00076 }; 00077 00078 } // namespace Internal 00079 } // namespace OpenMS 00080 00081 #endif // OPENMS_FORMAT_HANDLERS_MASCOTXMLHANDLER_H
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