#include <OpenMS/FORMAT/PepNovoOutfile.h>
This class serves to read in a PepNovo outfile. The information can be retrieved via the load function.
Public Member Functions | |
PepNovoOutfile () | |
Constructor. | |
PepNovoOutfile (const PepNovoOutfile &pepnovo_outfile) | |
copy constructor | |
virtual | ~PepNovoOutfile () |
destructor | |
PepNovoOutfile & | operator= (const PepNovoOutfile &pepnovo_outfile) |
assignment operator | |
bool | operator== (const PepNovoOutfile &pepnovo_outfile) const |
equality operator | |
void | load (const std::string &result_filename, std::vector< PeptideIdentification > &peptide_identifications, ProteinIdentification &protein_identification, const Real &p_value_threshold, const std::map< String, Real > &dta_filenames_and_precursor_retention_times) throw (Exception::FileNotFound, Exception::ParseError) |
loads data from a Inspect outfile | |
void | getSearchEngineAndVersion (const String &pepnovo_output_without_parameters_filename, ProteinIdentification &protein_identification) throw (Exception::FileNotFound) |
get the search engine and it's version from a file that is the output of PepNovo run without parameters |
PepNovoOutfile | ( | ) |
Constructor.
PepNovoOutfile | ( | const PepNovoOutfile & | pepnovo_outfile | ) |
copy constructor
virtual ~PepNovoOutfile | ( | ) | [virtual] |
destructor
PepNovoOutfile& operator= | ( | const PepNovoOutfile & | pepnovo_outfile | ) |
assignment operator
bool operator== | ( | const PepNovoOutfile & | pepnovo_outfile | ) | const |
equality operator
void load | ( | const std::string & | result_filename, | |
std::vector< PeptideIdentification > & | peptide_identifications, | |||
ProteinIdentification & | protein_identification, | |||
const Real & | p_value_threshold, | |||
const std::map< String, Real > & | dta_filenames_and_precursor_retention_times | |||
) | throw (Exception::FileNotFound, Exception::ParseError) |
loads data from a Inspect outfile
result_filename | the file to be loaded | |
peptide_identifications | the peptide identification | |
protein_identification | the protein identifications | |
p_value_threshold | the significance level (for the peptide hit scores) | |
dta_filenames_and_precursor_retention_times | retention times |
void getSearchEngineAndVersion | ( | const String & | pepnovo_output_without_parameters_filename, | |
ProteinIdentification & | protein_identification | |||
) | throw (Exception::FileNotFound) |
get the search engine and it's version from a file that is the output of PepNovo run without parameters
Generated Tue Apr 1 15:36:45 2008 -- using doxygen 1.5.4 | OpenMS / TOPP 1.1 |