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OpenMS Class Index
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A
MascotXMLHandler
(
OpenMS::Internal
)
AASequence
(
OpenMS
)
MassAnalyzer
(
OpenMS
)
Acquisition
(
OpenMS
)
MassAnalyzerVisualizer
(
OpenMS
)
AcquisitionInfo
(
OpenMS
)
Matrix
(
OpenMS
)
AcquisitionInfoVisualizer
(
OpenMS
)
MaxLikeliFitter1D
(
OpenMS
)
AcquisitionVisualizer
(
OpenMS
)
MemoryMap
(
OpenMS
)
ANDIFile
(
OpenMS
)
MetaInfo
(
OpenMS
)
ANDIHandler
(
OpenMS::Internal
)
MetaInfoDescription
(
OpenMS
)
AreaIterator
(
OpenMS::Internal
)
MetaInfoDescriptionVisualizer
(
OpenMS
)
AsymmetricStatistics
(
OpenMS::Math
)
MetaInfoInterface
(
OpenMS
)
AveragePosition
(
OpenMS::Math
)
MetaInfoRegistry
(
OpenMS
)
AxisTickCalculator
(
OpenMS
)
MetaInfoVisualizer
(
OpenMS
)
AxisWidget
(
OpenMS
)
MissingInformation
(
OpenMS::Exception
)
B
ModelDescription
(
OpenMS
)
Base
(
OpenMS::Exception
)
ModelFitter
(
OpenMS
)
Base64
(
OpenMS
)
Modification
(
OpenMS
)
BaseAlignment
(
OpenMS
)
ModificationVisualizer
(
OpenMS
)
BaseMapMatcher
(
OpenMS
)
ModifierRep
(
OpenMS
)
BaseModel
(
OpenMS
)
MorphFilter
(
OpenMS
)
BasePairFinder
(
OpenMS
)
MSExperiment
(
OpenMS
)
BasePairwiseMapMatcher
(
OpenMS
)
MSMetaDataExplorer
(
OpenMS
)
BaseSuperimposer
(
OpenMS
)
MSSpectrum
(
OpenMS
)
BaseVisualizer
(
OpenMS
)
MSSpectrum::RTLess
(
OpenMS
)
BasicStatistics
(
OpenMS::Math
)
MultiGradient
(
OpenMS
)
BernNorm
(
OpenMS
)
MultiGradientSelector
(
OpenMS
)
BiGaussFitter1D
(
OpenMS
)
MzDataExpSettHandler
(
OpenMS::Internal
)
BiGaussModel
(
OpenMS
)
MzDataFile
(
OpenMS
)
BigString
(
OpenMS
)
MzDataHandler
(
OpenMS::Internal
)
BilinearInterpolation
(
OpenMS::Math
)
MzIterator
(
OpenMS::Internal
)
binary_function
(std)
MzXMLFile
(
OpenMS
)
BinnedRep
(
OpenMS
)
MzXMLHandler
(
OpenMS::Internal
)
BinnedRepCompareFunctor
(
OpenMS
)
N
BinnedRepMutualInformation
(
OpenMS
)
NeutralLossDiffFilter
(
OpenMS
)
BinnedRepSharedPeakCount
(
OpenMS
)
NeutralLossMarker
(
OpenMS
)
BinnedRepSpectrumContrastAngle
(
OpenMS
)
NLargest
(
OpenMS
)
BinnedRepSumAgreeingIntensities
(
OpenMS
)
Normalizer
(
OpenMS
)
BufferOverflow
(
OpenMS::Exception
)
NotImplemented
(
OpenMS::Exception
)
C
NullPointer
(
OpenMS::Exception
)
CGAL::Cartesian
O
CGAL::Point_2
OMSSAXMLFile
(
OpenMS
)
ColorSelector
(
OpenMS
)
OMSSAXMLHandler
(
OpenMS::Internal
)
ComplementFilter
(
OpenMS
)
OpenDialog
(
OpenMS
)
ComplementMarker
(
OpenMS
)
OptimizePeakDeconvolution
(
OpenMS
)
ConsensusFeature
(
OpenMS
)
OptimizePick
(
OpenMS
)
ConsensusID
(
OpenMS
)
OutOfGrid
(
OpenMS::Exception
)
ConsensusMap
(
OpenMS
)
OutOfMemory
(
OpenMS::Exception
)
ConsensusPeak
(
OpenMS
)
OutOfRange
(
OpenMS::Exception
)
ConsensusXMLFile
(
OpenMS
)
P
ConsensusXMLHandler
(
OpenMS::Internal
)
pair
(std)
ContactPerson
(
OpenMS
)
PairMatcher
(
OpenMS
)
ContactPersonVisualizer
(
OpenMS
)
PairMatcher::Comparator
(
OpenMS
)
ContinuousWaveletTransform
(
OpenMS
)
Param
(
OpenMS
)
ContinuousWaveletTransformNumIntegration
(
OpenMS
)
Param::ParamEntry
(
OpenMS
)
ConversionError
(
OpenMS::Exception
)
Param::ParamIterator
(
OpenMS
)
ConvexHull2D
(
OpenMS
)
Param::ParamIterator::TraceInfo
(
OpenMS
)
D
Param::ParamNode
(
OpenMS
)
DataFilterDialog
(
OpenMS
)
ParamEditor
(
OpenMS
)
DataFilters
(
OpenMS
)
ParamEditorDelegate
(
OpenMS::Internal
)
DataFilters::DataFilter
(
OpenMS
)
ParamTree
(
OpenMS::Internal
)
DataTable
(
OpenMS
)
ParamXMLHandler
(
OpenMS::Internal
)
DataValue
(
OpenMS
)
ParentFilter
(
OpenMS
)
Date
(
OpenMS
)
ParentPeakMower
(
OpenMS
)
DateTime
(
OpenMS
)
ParseError
(
OpenMS::Exception
)
DBAdapter
(
OpenMS
)
Peak1D
(
OpenMS
)
DBConnection
(
OpenMS
)
Peak2D
(
OpenMS
)
DBConnection::InvalidQuery
(
OpenMS
)
PeakDensityFilter
(
OpenMS
)
DBConnection::NotConnected
(
OpenMS
)
PeakFileOptions
(
OpenMS
)
DBoundingBox
(
OpenMS
)
PeakIcon
(
OpenMS
)
DBSpectrumSelectorDialog
(
OpenMS
)
PeakMarker
(
OpenMS
)
DefaultParamHandler
(
OpenMS
)
PeakPicker
(
OpenMS
)
DelaunayPairFinder
(
OpenMS
)
PeakPickerCWT
(
OpenMS
)
DelaunayPairFinder::GeometricTraits
(
OpenMS
)
PeakPickerCWT::PeakArea_
(
OpenMS
)
DelaunayPairFinder::GeometricTraits::Construct_center_2
(
OpenMS
)
PeakShape
(
OpenMS
)
DelaunayPairFinder::Point
(
OpenMS
)
PeakShape::PositionLess
(
OpenMS
)
Digestion
(
OpenMS
)
PeakShapeType
(
OpenMS
)
DigestionVisualizer
(
OpenMS
)
PeakSpectrumCompareFunctor
(
OpenMS
)
DIntervalBase
(
OpenMS::Internal
)
PeakTypeEstimator
(
OpenMS
)
DivisionByZero
(
OpenMS::Exception
)
PenaltyFactors
(
OpenMS::OptimizationFunctions
)
DPeak
(
OpenMS
)
PenaltyFactorsIntensity
(
OpenMS::OptimizationFunctions
)
DPeakArray
(
OpenMS
)
PepIterator
(
OpenMS
)
DPeakConstReferenceArray
(
OpenMS
)
PepNovoInfile
(
OpenMS
)
DPeakConstReferenceArray::DPeakConstReferenceArrayConstIterator
(
OpenMS
)
PepNovoOutfile
(
OpenMS
)
DPeakConstReferenceArray::DPeakConstReferenceArrayIterator
(
OpenMS
)
PeptideHit
(
OpenMS
)
DPosition
(
OpenMS
)
PeptideHit::ScoreLess
(
OpenMS
)
DRange
(
OpenMS
)
PeptideHit::ScoreMore
(
OpenMS
)
DRawDataPoint
(
OpenMS
)
PeptideHitVisualizer
(
OpenMS
)
DRawDataPoint::IntensityLess
(
OpenMS
)
PeptideIdentification
(
OpenMS
)
DRawDataPoint::NthPositionLess
(
OpenMS
)
PeptideIdentificationVisualizer
(
OpenMS
)
DRawDataPoint::PositionLess
(
OpenMS
)
PersistentObject
(
OpenMS
)
DSpectrum
(
OpenMS
)
PickedPeak1D
(
OpenMS
)
DTA2DFile
(
OpenMS
)
PickedPeak1D::WidthLess
(
OpenMS
)
DTAFile
(
OpenMS
)
PILISScoring
(
OpenMS
)
E
PointerComparator
(
OpenMS
)
EdwardsLippertIterator
(
OpenMS
)
PoseClusteringAffineSuperimposer
(
OpenMS
)
EdwardsLippertIteratorTryptic
(
OpenMS
)
PoseClusteringPairwiseMapMatcher
(
OpenMS
)
Element
(
OpenMS
)
PoseClusteringShiftSuperimposer
(
OpenMS
)
ElementDB
(
OpenMS
)
PoseClusteringShiftSuperimposer::Shift
(
OpenMS
)
ElementNotFound
(
OpenMS::Exception
)
Postcondition
(
OpenMS::Exception
)
ElementPair
(
OpenMS
)
PreciseTime
(
OpenMS
)
EmgFitter1D
(
OpenMS
)
Precondition
(
OpenMS::Exception
)
EmgFitter1D::Data
(
OpenMS
)
Precursor
(
OpenMS
)
EmgModel
(
OpenMS
)
PrecursorPeak
(
OpenMS::Internal
)
EmpiricalFormula
(
OpenMS
)
PrecursorVisualizer
(
OpenMS
)
EnhancedTabBar
(
OpenMS
)
PreprocessingFunctor
(
OpenMS
)
EnzymaticDigestion
(
OpenMS
)
ProcessingMethod
(
OpenMS
)
ExperimentalSettings
(
OpenMS
)
ProcessingMethodVisualizer
(
OpenMS
)
ExperimentalSettingsVisualizer
(
OpenMS
)
ProcessResource
(
OpenMS
)
ExtendedIsotopeFitter1D
(
OpenMS
)
ProductModel
(
OpenMS
)
ExtendedIsotopeModel
(
OpenMS
)
ProgressLogger
(
OpenMS
)
ExternalAllocator
(
OpenMS
)
ProteinHit
(
OpenMS
)
ExternalAllocator::rebind
(
OpenMS
)
ProteinHitVisualizer
(
OpenMS
)
ExternalAllocatorUnique
(
OpenMS
)
ProteinIdentification
(
OpenMS
)
F
ProteinIdentification::SearchParameters
(
OpenMS
)
Factory
(
OpenMS
)
ProteinIdentificationVisualizer
(
OpenMS
)
FactoryBase
(
OpenMS
)
ProtonDistributionModel
(
OpenMS
)
FactoryProduct
(
OpenMS
)
PTMXMLFile
(
OpenMS
)
FASTAFile
(
OpenMS
)
PTMXMLHandler
(
OpenMS::Internal
)
FastaIterator
(
OpenMS
)
Q
FastaIteratorIntern
(
OpenMS
)
QDate
FeaFiModule
(
OpenMS
)
QDateTime
Feature
(
OpenMS
)
QDialog
Feature::OverallQualityLess
(
OpenMS
)
QGLWidget
FeatureDecharger
(
OpenMS
)
QItemDelegate
FeatureFinder
(
OpenMS
)
QMainWindow
FeatureFinderAlgorithm
(
OpenMS
)
QTabBar
FeatureFinderAlgorithmPicked
(
OpenMS
)
QTreeWidget
FeatureFinderAlgorithmPicked::IsotopePattern
(
OpenMS
)
QWidget
FeatureFinderAlgorithmPicked::MassTrace
(
OpenMS
)
R
FeatureFinderAlgorithmPicked::MassTraces
(
OpenMS
)
RangeManager
(
OpenMS
)
FeatureFinderAlgorithmPicked::PeakInfo
(
OpenMS
)
RawDataPoint1D
(
OpenMS
)
FeatureFinderAlgorithmPicked::Seed
(
OpenMS
)
RawDataPoint1D::IntensityLess
(
OpenMS
)
FeatureFinderAlgorithmPicked::TheoreticalIsotopePattern
(
OpenMS
)
RawDataPoint1D::PositionLess
(
OpenMS
)
FeatureFinderAlgorithmSimple
(
OpenMS
)
RawDataPoint2D
(
OpenMS
)
FeatureFinderAlgorithmSimplest
(
OpenMS
)
RawDataPoint2D::IntensityLess
(
OpenMS
)
FeatureFinderDefs
(
OpenMS
)
RawDataPoint2D::NthPositionLess
(
OpenMS
)
FeatureFinderDefs::NoSuccessor
(
OpenMS
)
RawDataPoint2D::PositionLess
(
OpenMS
)
FeatureFinderDefs::UnableToFit
(
OpenMS
)
RequiredParameterNotGiven
(
OpenMS::Exception
)
FeatureMap
(
OpenMS
)
Residue
(
OpenMS
)
FeaturePairsHandler
(
OpenMS::Internal
)
ResidueDB
(
OpenMS
)
FeaturePairsXMLFile
(
OpenMS
)
ResidueModification
(
OpenMS
)
FeatureXMLFile
(
OpenMS
)
ReverseComparator
(
OpenMS
)
FeatureXMLHandler
(
OpenMS::Internal
)
ROCCurve
(
OpenMS::Math
)
File
(
OpenMS
)
ROCCurve::simsortdec
(
OpenMS::Math
)
FileEmpty
(
OpenMS::Exception
)
RtIterator
(
OpenMS::Internal
)
FileHandler
(
OpenMS
)
S
FileNotFound
(
OpenMS::Exception
)
Sample
(
OpenMS
)
FileNotReadable
(
OpenMS::Exception
)
SampleTreatment
(
OpenMS
)
FilterFunctor
(
OpenMS
)
SampleVisualizer
(
OpenMS
)
Fitter1D
(
OpenMS
)
SaveImageDialog
(
OpenMS
)
FuzzyStringComparator
(
OpenMS
)
SavitzkyGolayFilter
(
OpenMS
)
FuzzyStringComparator::AbortComparison
(
OpenMS
)
Scaler
(
OpenMS
)
G
SequestInfile
(
OpenMS
)
GaussFilter
(
OpenMS
)
SequestOutfile
(
OpenMS
)
GaussFitter1D
(
OpenMS
)
SignalToNoiseEstimator
(
OpenMS
)
GaussModel
(
OpenMS
)
SignalToNoiseEstimator::GaussianEstimate
(
OpenMS
)
GlobalExceptionHandler
(
OpenMS::Exception
)
SignalToNoiseEstimatorMeanIterative
(
OpenMS
)
GoodDiffFilter
(
OpenMS
)
SignalToNoiseEstimatorMedian
(
OpenMS
)
Gradient
(
OpenMS
)
SimpleExtender
(
OpenMS
)
GradientVisualizer
(
OpenMS
)
SimpleExtender::IndexWithPriority
(
OpenMS
)
Grid
(
OpenMS
)
SimpleExtender::IndexWithPriority::PriorityLess
(
OpenMS
)
GridCell
(
OpenMS
)
SimplePairFinder
(
OpenMS
)
GridFile
(
OpenMS
)
SimpleSeeder
(
OpenMS
)
GridHandler
(
OpenMS::Internal
)
SingletonRegistry
(
OpenMS
)
Group
(
OpenMS
)
SizeUnderflow
(
OpenMS::Exception
)
H
SmoothFilter
(
OpenMS
)
HashFunction
(
OpenMS
)
Software
(
OpenMS
)
HashMap
(
OpenMS
)
SoftwareVisualizer
(
OpenMS
)
HashMap::ConstIterator
(
OpenMS
)
SourceFile
(
OpenMS
)
HashMap::IllegalKey
(
OpenMS
)
SourceFileVisualizer
(
OpenMS
)
HashMap::Iterator
(
OpenMS
)
SparseVector
(
OpenMS
)
HashMap::Node
(
OpenMS
)
SparseVector::DoubleProxy
(
OpenMS
)
HasScanMode
(
OpenMS
)
SparseVector::SparseVectorConstIterator
(
OpenMS
)
HierarchicalClustering
(
OpenMS
)
SparseVector::SparseVectorIterator
(
OpenMS
)
Histogram
(
OpenMS::Math
)
Spectrum1DCanvas
(
OpenMS
)
HistogramDialog
(
OpenMS
)
Spectrum1DGoToDialog
(
OpenMS
)
HistogramWidget
(
OpenMS
)
Spectrum1DPrefDialog
(
OpenMS::Internal
)
HPLC
(
OpenMS
)
Spectrum1DWidget
(
OpenMS
)
HPLCVisualizer
(
OpenMS
)
Spectrum2DCanvas
(
OpenMS
)
I
Spectrum2DGoToDialog
(
OpenMS
)
IDFeatureMapper
(
OpenMS
)
Spectrum2DPrefDialog
(
OpenMS::Internal
)
IDFilter
(
OpenMS
)
Spectrum2DWidget
(
OpenMS
)
IDSpectrumMapper
(
OpenMS
)
Spectrum3DCanvas
(
OpenMS
)
IdXMLFile
(
OpenMS
)
Spectrum3DOpenGLCanvas
(
OpenMS
)
IllegalArgument
(
OpenMS::Exception
)
Spectrum3DPrefDialog
(
OpenMS::Internal
)
IllegalPosition
(
OpenMS::Exception
)
Spectrum3DWidget
(
OpenMS
)
IllegalSelfOperation
(
OpenMS::Exception
)
SpectrumAlignment
(
OpenMS
)
IllegalTreeOperation
(
OpenMS::Exception
)
SpectrumAlignmentScore
(
OpenMS
)
IncompatibleIterators
(
OpenMS::Exception
)
SpectrumCanvas
(
OpenMS
)
IndexOverflow
(
OpenMS::Exception
)
SpectrumCheapDPCorr
(
OpenMS
)
IndexTuple
(
OpenMS
)
SpectrumPrecursorComparator
(
OpenMS
)
IndexTuple::IndexLess
(
OpenMS
)
SpectrumSettings
(
OpenMS
)
IndexUnderflow
(
OpenMS::Exception
)
SpectrumSettingsVisualizer
(
OpenMS
)
INIFileEditorWindow
(
OpenMS
)
SpectrumWidget
(
OpenMS
)
InIntensityRange
(
OpenMS
)
SqrtMower
(
OpenMS
)
InMSLevelRange
(
OpenMS
)
StarAlignment
(
OpenMS
)
InMzRange
(
OpenMS
)
StopWatch
(
OpenMS
)
InRTRange
(
OpenMS
)
String
(
OpenMS
)
InspectInfile
(
OpenMS
)
StringList
(
OpenMS
)
InspectOutfile
(
OpenMS
)
StringManager
(
OpenMS::Internal
)
Instrument
(
OpenMS
)
SuffixArray
(
OpenMS
)
InstrumentSettings
(
OpenMS
)
SuffixArrayPeptideFinder
(
OpenMS
)
InstrumentSettingsVisualizer
(
OpenMS
)
SuffixArraySeqan
(
OpenMS
)
InstrumentVisualizer
(
OpenMS
)
SuffixArrayTrypticCompressed
(
OpenMS
)
IntensityBalanceFilter
(
OpenMS
)
SuffixArrayTrypticSeqan
(
OpenMS
)
IntensityIterator
(
OpenMS::Internal
)
SVMWrapper
(
OpenMS
)
IntensityLess
(
OpenMS::Internal
)
T
InternalCalibration
(
OpenMS
)
Tagging
(
OpenMS
)
InterpolationModel
(
OpenMS
)
TaggingVisualizer
(
OpenMS
)
InvalidIterator
(
OpenMS::Exception
)
TextFile
(
OpenMS
)
InvalidParameter
(
OpenMS::Exception
)
TheoreticalSpectrumGenerator
(
OpenMS
)
InvalidRange
(
OpenMS::Exception
)
ThresholdMower
(
OpenMS
)
InvalidSize
(
OpenMS::Exception
)
TICFilter
(
OpenMS
)
InvalidValue
(
OpenMS::Exception
)
TimeStamp
(
OpenMS
)
IonDetector
(
OpenMS
)
TOFCalibration
(
OpenMS
)
IonDetectorVisualizer
(
OpenMS
)
TOFCalibration::UnableToCalibrate
(
OpenMS
)
IonSource
(
OpenMS
)
ToolsDialog
(
OpenMS
)
IonSourceVisualizer
(
OpenMS
)
TopHatFilter
(
OpenMS
)
IsEmptySpectrum
(
OpenMS
)
TOPPBase
(
OpenMS
)
IsotopeCluster
(
OpenMS
)
TOPPBase::ParameterInformation
(
OpenMS
)
IsotopeCluster::ChargedIndexSet
(
OpenMS
)
TOPPViewBase
(
OpenMS
)
IsotopeDiffFilter
(
OpenMS
)
TOPPViewPrefDialog
(
OpenMS::Internal
)
IsotopeDistribution
(
OpenMS
)
TrypticIterator
(
OpenMS
)
IsotopeFitter1D
(
OpenMS
)
TwoDOptimization
(
OpenMS
)
IsotopeMarker
(
OpenMS
)
TwoDOptimization::IndexLess
(
OpenMS
)
IsotopeModel
(
OpenMS
)
U
IsotopeWavelet
(
OpenMS
)
Ui::DataFilterDialogTemplate
IsotopeWavelet::fi_
(
OpenMS
)
Ui::LayerStatisticsDialogTemplate
IsotopeWaveletTransform
(
OpenMS
)
Ui::OpenDialogTemplate
IsotopeWaveletTransform::BoxElement_
(
OpenMS
)
Ui::ParamEditorTemplate
iterator
(std)
Ui::Spectrum1DGoToDialogTemplate
L
Ui::Spectrum1DPrefDialogTemplate
LayerData
(
OpenMS
)
Ui::Spectrum2DGoToDialogTemplate
LayerStatisticsDialog
(
OpenMS
)
Ui::Spectrum2DPrefDialogTemplate
LayerStatisticsDialog::MetaStatsValue_
(
OpenMS
)
Ui::Spectrum3DPrefDialogTemplate
LevMarqFitter1D
(
OpenMS
)
Ui::TOPPViewPrefDialogTemplate
LexicographicComparator
(
OpenMS
)
UnableToCreateFile
(
OpenMS::Exception
)
LibSVMEncoder
(
OpenMS
)
unary_function
(std)
LinearInterpolation
(
OpenMS::Math
)
UniqueIdGenerator
(
OpenMS
)
LinearMapping
(
OpenMS
)
UnregisteredParameter
(
OpenMS::Exception
)
LinearRegression
(
OpenMS::Math
)
V
LinearResampler
(
OpenMS
)
VersionInfo
(
OpenMS
)
LmaGaussFitter1D
(
OpenMS
)
W
LmaGaussFitter1D::Data
(
OpenMS
)
WindowMower
(
OpenMS
)
LmaGaussModel
(
OpenMS
)
WrongParameterType
(
OpenMS::Exception
)
LmaIsotopeFitter1D
(
OpenMS
)
X
LmaIsotopeFitter1D::Data
(
OpenMS
)
xercesc::DefaultHandler
LmaIsotopeModel
(
OpenMS
)
xercesc::ErrorHandler
M
XMLFile
(
OpenMS::Internal
)
MapDewarper
(
OpenMS
)
XMLHandler
(
OpenMS::Internal
)
MapMatcherRegression
(
OpenMS
)
XMLHandler::EndParsingSoftly
(
OpenMS::Internal
)
MarkerMower
(
OpenMS
)
XMLValidator
(
OpenMS
)
MascotInfile
(
OpenMS
)
Z
MascotOutfile
(
OpenMS
)
ZhangSimilarityScore
(
OpenMS
)
MascotXMLFile
(
OpenMS
)
A
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B
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C
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E
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L
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M
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P
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Q
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S
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T
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U
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V
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W
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X
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Z
Generated Tue Apr 1 15:36:41 2008 -- using doxygen 1.5.4
OpenMS / TOPP 1.1