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Residue Member List

This is the complete list of members for Residue, including all inherited members.

addSynonym(const String &synonym)Residue
AIon enum valueResidue
average_weight_Residue [protected]
BIon enum valueResidue
CIon enum valueResidue
CTerminal enum valueResidue
formula_Residue [protected]
Full enum valueResidue
gb_bb_l_Residue [protected]
gb_bb_r_Residue [protected]
gb_sc_Residue [protected]
getAIonToFull()Residue [inline, static]
getAIonToFullAverageWeight()Residue [inline, static]
getAIonToFullMonoWeight()Residue [inline, static]
getAverageWeight(ResidueType res_type=Full) const Residue
getBackboneBasicityLeft() const Residue
getBackboneBasicityRight() const Residue
getBIonToFull()Residue [inline, static]
getBIonToFullAverageWeight()Residue [inline, static]
getBIonToFullMonoWeight()Residue [inline, static]
getCIonToFull()Residue [inline, static]
getCIonToFullAverageWeight()Residue [inline, static]
getCIonToFullMonoWeight()Residue [inline, static]
getCTerminalToFull()Residue [inline, static]
getCTerminalToFullAverageWeight()Residue [inline, static]
getCTerminalToFullMonoWeight()Residue [inline, static]
getFormula(ResidueType res_type=Full) const Residue
getInternalToFull()Residue [inline, static]
getInternalToFullAverageWeight()Residue [inline, static]
getInternalToFullMonoWeight()Residue [inline, static]
getLossAverageWeight() const Residue
getLossFormula() const Residue
getLossMonoWeight() const Residue
getLossName() const Residue
getLowMassIons() const Residue
getModification() const Residue
getMonoWeight(ResidueType res_type=Full) const Residue
getName() const Residue
getNTerminalToFull()Residue [inline, static]
getNTerminalToFullAverageWeight()Residue [inline, static]
getNTerminalToFullMonoWeight()Residue [inline, static]
getOneLetterCode() const Residue
getPiValue() const Residue
getPka() const Residue
getPkb() const Residue
getPkc() const Residue
getShortName() const Residue
getSideChainBasicity() const Residue
getSynonyms() const Residue
getThreeLetterCode() const Residue
getUnmodifiedName() const Residue
getXIonToFull()Residue [inline, static]
getXIonToFullAverageWeight()Residue [inline, static]
getXIonToFullMonoWeight()Residue [inline, static]
getYIonToFull()Residue [inline, static]
getYIonToFullAverageWeight()Residue [inline, static]
getYIonToFullMonoWeight()Residue [inline, static]
getZIonToFull()Residue [inline, static]
getZIonToFullAverageWeight()Residue [inline, static]
getZIonToFullMonoWeight()Residue [inline, static]
hasNeutralLoss() const Residue
Internal enum valueResidue
internal_formula_Residue [protected]
is_modified_Residue [protected]
isModified() const Residue
loss_average_weight_Residue [protected]
loss_formula_Residue [protected]
loss_mono_weight_Residue [protected]
loss_name_Residue [protected]
low_mass_ions_Residue [protected]
LowMassConstIterator typedefResidue
LowMassIterator typedefResidue
modification_Residue [protected]
mono_weight_Residue [protected]
name_Residue [protected]
NTerminal enum valueResidue
one_letter_code_Residue [protected]
operator!=(const Residue &residue) const Residue
operator!=(char one_letter_code) const Residue
operator<<(std::ostream &os, const Residue &residue)Residue [friend]
operator=(const Residue &residue)Residue
operator==(const Residue &residue) const Residue
operator==(char one_letter_code) const Residue
pka_Residue [protected]
pkb_Residue [protected]
pkc_Residue [protected]
pre_mod_name_Residue [protected]
Residue()Residue
Residue(const Residue &residue)Residue
Residue(const String &name, const String &three_letter_code, const String &one_letter_code, const EmpiricalFormula &formula, const EmpiricalFormula &neutral_loss)Residue
ResidueType enum nameResidue
setAverageWeight(DoubleReal weight, ResidueType res_type=Full)Residue
setBackboneBasicityLeft(DoubleReal gb_bb_l)Residue
setBackboneBasicityRight(DoubleReal gb_bb_r)Residue
setFormula(const EmpiricalFormula &formula, ResidueType res_type=Full)Residue
setLossAverageWeight(DoubleReal weight)Residue
setLossFormula(const EmpiricalFormula &)Residue
setLossMonoWeight(DoubleReal weight)Residue
setLossName(const String &name)Residue
setLowMassIons(const std::vector< EmpiricalFormula > &low_mass_ions)Residue
setModification(ResidueModification *modification)Residue
setMonoWeight(DoubleReal weight, ResidueType res_type=Full)Residue
setName(const String &name)Residue
setOneLetterCode(const String &one_letter_code)Residue
setPka(DoubleReal value)Residue
setPkb(DoubleReal value)Residue
setPkc(DoubleReal value)Residue
setShortName(const String &short_name)Residue
setSideChainBasicity(DoubleReal gb_sc)Residue
setSynonyms(const std::set< String > &synonyms)Residue
setThreeLetterCode(const String &three_letter_code)Residue
setUnmodifiedName(const String &name)Residue
short_name_Residue [protected]
synonyms_Residue [protected]
three_letter_code_Residue [protected]
XIon enum valueResidue
YIon enum valueResidue
ZIon enum valueResidue
~Residue()Residue [virtual]


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