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TwoDOptimization Member List

This is the complete list of members for TwoDOptimization, including all inherited members.

check_defaults_DefaultParamHandler [protected]
curr_region_TwoDOptimization [protected]
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandler [protected]
defaultsToParam_()DefaultParamHandler [protected]
eps_abs_TwoDOptimization [protected]
eps_rel_TwoDOptimization [protected]
error_name_DefaultParamHandler [protected]
findMatchingPeaks_(std::multimap< double, IsotopeCluster >::iterator &it, MSExperiment< PickedPeak1D > &ms_exp)TwoDOptimization [protected]
getDefaults() const DefaultParamHandler
getMaxAbsError() const TwoDOptimization [inline]
getMaxIterations() const TwoDOptimization [inline]
getMaxPeakDistance() const TwoDOptimization [inline]
getMaxRelError() const TwoDOptimization [inline]
getMZTolerance() const TwoDOptimization [inline]
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getPenalties() const TwoDOptimization [inline]
getRegionEndpoints_(MSExperiment< OutputPeakType > &exp, InputSpectrumIterator &first, InputSpectrumIterator &last, unsigned int iso_map_idx, double noise_level)TwoDOptimization [inline, protected]
getSubsections() const DefaultParamHandler
iso_map_TwoDOptimization [protected]
matching_peaks_TwoDOptimization [protected]
max_iteration_TwoDOptimization [protected]
max_peak_distance_TwoDOptimization [protected]
operator=(const TwoDOptimization &opt)TwoDOptimization
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandler [virtual]
operator==(const DefaultParamHandler &rhs) const DefaultParamHandler [virtual]
optimize(InputSpectrumIterator &first, InputSpectrumIterator &last, MSExperiment< OutputPeakType > &ms_exp, bool real2D=true)TwoDOptimization [inline]
optimizeRegions_(InputSpectrumIterator &first, InputSpectrumIterator &last, MSExperiment< OutputPeakType > &ms_exp)TwoDOptimization [inline, protected]
optimizeRegions_(MSExperiment< RawDataPoint1D >::const_iterator &first, MSExperiment< RawDataPoint1D >::const_iterator &last, MSExperiment< PickedPeak1D > &ms_exp)TwoDOptimization [inline, protected]
optimizeRegionsScanwise_(InputSpectrumIterator &first, InputSpectrumIterator &last, MSExperiment< OutputPeakType > &ms_exp)TwoDOptimization [inline, protected]
optimizeRegionsScanwise_(MSExperiment< RawDataPoint1D >::const_iterator &first, MSExperiment< RawDataPoint1D >::const_iterator &last, MSExperiment< PickedPeak1D > &ms_exp)TwoDOptimization [inline, protected]
param_DefaultParamHandler [protected]
penalties_TwoDOptimization [protected]
real_2D_TwoDOptimization [protected]
searchInScan_(std::vector< double >::iterator scan_begin, std::vector< double >::iterator scan_end, double current_mz)TwoDOptimization [protected]
setMaxAbsError(double eps_abs)TwoDOptimization [inline]
setMaxIterations(int max_iteration)TwoDOptimization [inline]
setMaxPeakDistance(double max_peak_distance)TwoDOptimization [inline]
setMaxRelError(double eps_rel)TwoDOptimization [inline]
setMZTolerance(double tolerance_mz)TwoDOptimization [inline]
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setPenalties(OptimizationFunctions::PenaltyFactorsIntensity &penalties)TwoDOptimization [inline]
subsections_DefaultParamHandler [protected]
tolerance_mz_TwoDOptimization [protected]
TwoDOptimization()TwoDOptimization
TwoDOptimization(const TwoDOptimization &opt)TwoDOptimization
updateMembers_()TwoDOptimization [protected, virtual]
~DefaultParamHandler()DefaultParamHandler [virtual]
~TwoDOptimization()TwoDOptimization [inline, virtual]


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