begin_ | ProgressLogger | [mutable, protected] |
boundary_ | MascotInfile | [protected] |
charges_ | MascotInfile | [protected] |
cleavage_ | MascotInfile | [protected] |
CMD enum value | ProgressLogger | |
db_ | MascotInfile | [protected] |
dlg_ | ProgressLogger | [mutable, protected] |
end_ | ProgressLogger | [mutable, protected] |
endProgress() const | ProgressLogger | |
form_version_ | MascotInfile | [protected] |
getBoundary() | MascotInfile | |
getCharges() | MascotInfile | |
getCleavage() | MascotInfile | |
getDB() | MascotInfile | |
getFormVersion() | MascotInfile | |
getHits() | MascotInfile | |
getInstrument() | MascotInfile | |
getMassType() | MascotInfile | |
getMissedCleavages() | MascotInfile | |
getModifications() | MascotInfile | |
getNextSpectrum_(std::istream &is, std::vector< std::pair< double, double > > &spectrum, UInt &charge, double &precursor_mz, double &precursor_int, double &rt, String &title) | MascotInfile | [protected] |
getPeakMassTolerance() | MascotInfile | |
getPrecursorMassTolerance() | MascotInfile | |
getSearchType() | MascotInfile | |
getTaxonomy() | MascotInfile | |
getVariableModifications() | MascotInfile | |
GUI enum value | ProgressLogger | |
hits_ | MascotInfile | [protected] |
instrument_ | MascotInfile | [protected] |
ion_mass_tolerance_ | MascotInfile | [protected] |
load(const String &filename, MapType &map) | MascotInfile | [inline] |
LogType enum name | ProgressLogger | |
MascotInfile() | MascotInfile | |
mass_type_ | MascotInfile | [protected] |
missed_cleavages_ | MascotInfile | [protected] |
mods_ | MascotInfile | [protected] |
mz_ | MascotInfile | [protected] |
NONE enum value | ProgressLogger | |
precursor_mass_tolerance_ | MascotInfile | [protected] |
ProgressLogger() | ProgressLogger | |
retention_time_ | MascotInfile | [protected] |
search_title_ | MascotInfile | [protected] |
search_type_ | MascotInfile | [protected] |
setBoundary(const String &boundary) | MascotInfile | |
setCharges(std::vector< Int > &charges) | MascotInfile | |
setCleavage(const String &cleavage) | MascotInfile | |
setDB(const String &db) | MascotInfile | |
setFormVersion(const String &form_version) | MascotInfile | |
setHits(const String &hits) | MascotInfile | |
setInstrument(const String &instrument) | MascotInfile | |
setLogType(LogType type) const | ProgressLogger | |
setMassType(const String &mass_type) | MascotInfile | |
setMissedCleavages(UInt missed_cleavages) | MascotInfile | |
setModifications(const std::vector< String > &mods) | MascotInfile | |
setPeakMassTolerance(Real ion_mass_tolerance) | MascotInfile | |
setPrecursorMassTolerance(Real precursor_mass_tolerance) | MascotInfile | |
setProgress(UInt value) const | ProgressLogger | |
setSearchType(const String &search_type) | MascotInfile | |
setTaxonomy(const String &taxonomy) | MascotInfile | |
setVariableModifications(const std::vector< String > &mods) | MascotInfile | |
startProgress(UInt begin, UInt end, const String &label) const | ProgressLogger | |
store(const String &filename, const DPeakArray< Peak1D > &spec, DoubleReal mz, DoubleReal retention_time, String search_title) | MascotInfile | |
store(const String &filename, const MSExperiment< Peak1D > &experiment, String search_title) | MascotInfile | |
taxonomy_ | MascotInfile | [protected] |
type_ | ProgressLogger | [mutable, protected] |
value_ | ProgressLogger | [mutable, protected] |
variable_mods_ | MascotInfile | [protected] |
writeHeader_(FILE *fp) | MascotInfile | [protected] |
writeMSExperiment_(FILE *fp, const String &filename, const MSExperiment< Peak1D > &experiment) | MascotInfile | [protected] |
writeParameterHeader_(const String &name, FILE *fp, bool line_break=true) | MascotInfile | [protected] |
writeSpectrum_(FILE *fp, const String &filename, const DPeakArray< Peak1D > &peaks) | MascotInfile | [protected] |
~MascotInfile() | MascotInfile | [virtual] |
~ProgressLogger() | ProgressLogger | |