Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages

Fitter1D.h (Maintainer: Marcel Grunert)

Go to the documentation of this file.
00001 // -*- Mode: C++; tab-width: 2; -*-
00002 // vi: set ts=2:
00003 //
00004 // --------------------------------------------------------------------------
00005 //                   OpenMS Mass Spectrometry Framework
00006 // --------------------------------------------------------------------------
00007 //  Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert
00008 //
00009 //  This library is free software; you can redistribute it and/or
00010 //  modify it under the terms of the GNU Lesser General Public
00011 //  License as published by the Free Software Foundation; either
00012 //  version 2.1 of the License, or (at your option) any later version.
00013 //
00014 //  This library is distributed in the hope that it will be useful,
00015 //  but WITHOUT ANY WARRANTY; without even the implied warranty of
00016 //  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
00017 //  Lesser General Public License for more details.
00018 //
00019 //  You should have received a copy of the GNU Lesser General Public
00020 //  License along with this library; if not, write to the Free Software
00021 //  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
00022 //
00023 // --------------------------------------------------------------------------
00024 // $Maintainer: Marcel Grunert $
00025 // --------------------------------------------------------------------------
00026 
00027 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_FITTER1D_H
00028 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_FITTER1D_H
00029 
00030 #include <OpenMS/DATASTRUCTURES/IsotopeCluster.h>
00031 #include <OpenMS/CONCEPT/FactoryProduct.h>
00032 #include <OpenMS/CONCEPT/Exception.h>
00033 #include <OpenMS/KERNEL/Feature.h>
00034 #include <OpenMS/MATH/STATISTICS/BasicStatistics.h>
00035 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderDefs.h>
00036 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h>
00037 
00038 namespace OpenMS
00039 {
00048     class Fitter1D
00049     : public FactoryProduct,
00050       public FeatureFinderDefs
00051     {
00052         public:
00053             
00055             typedef IsotopeCluster::IndexSet IndexSet;
00057             typedef IsotopeCluster::ChargedIndexSet ChargedIndexSet;
00059             typedef Feature::CoordinateType CoordinateType;
00061             typedef Feature::QualityType QualityType;
00063             typedef RawDataPoint1D RawDataPointType;
00065             typedef DPeakArray<RawDataPointType > RawDataArrayType;
00067             typedef RawDataArrayType::iterator RawDataPointIterator;
00068           
00070             Fitter1D();
00071             
00073             Fitter1D(const Fitter1D& source);
00074     
00076             virtual ~Fitter1D();
00077     
00079             virtual Fitter1D& operator = (const Fitter1D& source);
00080                             
00082             virtual QualityType fit1d(const RawDataArrayType& range, InterpolationModel*& model)=0; 
00083     
00085             static void registerChildren();
00086     
00087         protected:
00088     
00090             CoordinateType tolerance_stdev_box_;
00092             CoordinateType min_;
00094             CoordinateType max_;
00096             CoordinateType stdev1_; 
00098             CoordinateType stdev2_;
00100             Math::BasicStatistics<> statistics_;
00102             CoordinateType interpolation_step_;
00103             
00104             virtual void updateMembers_();
00105         
00106     };
00107 }
00108 
00109 #endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_FITTER1D_H

Generated Tue Apr 1 15:36:34 2008 -- using doxygen 1.5.4 OpenMS / TOPP 1.1