asBool_(const String &in) | XMLHandler | [inline, protected] |
asDateTime_(const String &in) | XMLHandler | [inline, protected] |
asDouble_(const String &in) | XMLHandler | [inline, protected] |
asFloat_(const String &in) | XMLHandler | [inline, protected] |
asInt_(const String &in) | XMLHandler | [inline, protected] |
asInt_(const XMLCh *in) | XMLHandler | [inline, protected] |
asUInt_(const String &in) | XMLHandler | [inline, protected] |
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
characters(const XMLCh *const chars, unsigned int length) | XMLHandler | [protected, virtual] |
cv_terms_ | XMLHandler | [protected] |
cvStringToEnum_(UInt section, const String &term, const char *message) | XMLHandler | [inline, protected] |
endElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname) | IdXMLFile | [protected, virtual] |
equal_(const XMLCh *a, const XMLCh *b) | XMLHandler | [inline, protected] |
error(const xercesc::SAXParseException &exception) | XMLHandler | [protected] |
error(const String &msg, UInt line=0, UInt column=0) const | XMLHandler | [protected] |
error_message_ | XMLHandler | [mutable, protected] |
errorString() | XMLHandler | [protected] |
fatalError(const xercesc::SAXParseException &exception) | XMLHandler | [protected] |
fatalError(const String &msg, UInt line=0, UInt column=0) const | XMLHandler | [protected] |
file_ | XMLHandler | [protected] |
getVersion() const | XMLFile | |
id_ | IdXMLFile | [protected] |
IdXMLFile() | IdXMLFile | |
isValid(const String &filename) | XMLFile | |
last_meta_ | IdXMLFile | [protected] |
load(const String &filename, std::vector< ProteinIdentification > &protein_ids, std::vector< PeptideIdentification > &peptide_ids) | IdXMLFile | |
open_tags_ | XMLHandler | [protected] |
optionalAttributeAsDouble_(DoubleReal &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
optionalAttributeAsDouble_(DoubleReal &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
param_ | IdXMLFile | [protected] |
parameters_ | IdXMLFile | [protected] |
parse_(const String &filename, XMLHandler *handler) | XMLFile | [protected] |
pep_hit_ | IdXMLFile | [protected] |
pep_id_ | IdXMLFile | [protected] |
pep_ids_ | IdXMLFile | [protected] |
prot_hit_ | IdXMLFile | [protected] |
prot_id_ | IdXMLFile | [protected] |
prot_ids_ | IdXMLFile | [protected] |
proteinid_to_accession_ | IdXMLFile | [protected] |
save_(const String &filename, XMLHandler *handler) const | XMLFile | [protected] |
schema_location_ | XMLFile | [protected] |
schema_version_ | XMLFile | [protected] |
sm_ | XMLHandler | [protected] |
startElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname, const xercesc::Attributes &attributes) | IdXMLFile | [protected, virtual] |
store(String filename, const std::vector< ProteinIdentification > &protein_ids, const std::vector< PeptideIdentification > &peptide_ids) | IdXMLFile | |
version_ | XMLHandler | [protected] |
warning(const xercesc::SAXParseException &exception) | XMLHandler | [protected] |
warning(const String &msg, UInt line=0, UInt column=0) const | XMLHandler | [protected] |
writeCVS_(std::ostream &os, DoubleReal value, const String &acc, const String &name, int indent=4) const | XMLHandler | [inline, protected] |
writeCVS_(std::ostream &os, const String &value, const String &acc, const String &name, int indent=4) const | XMLHandler | [inline, protected] |
writeCVS_(std::ostream &os, int value, int map, const String &acc, const String &name, int indent=4) | XMLHandler | [protected] |
writeTo(std::ostream &) | XMLHandler | [inline, protected, virtual] |
writeUserParam_(std::ostream &os, const MetaInfoInterface &meta, int indent=4) | XMLHandler | [inline, protected] |
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | [protected] |
XMLFile() | XMLFile | |
XMLFile(const String &schema_location, const String &version) | XMLFile | |
XMLHandler(const String &filename, const String &version) | XMLHandler | [protected] |
~XMLFile() | XMLFile | |
~XMLHandler() | XMLHandler | [protected, virtual] |