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SpectrumAlignment.h (Maintainer: Andreas Bertsch)

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00001 // -*- Mode: C++; tab-width: 2; -*-
00002 // vi: set ts=2:
00003 //
00004 // --------------------------------------------------------------------------
00005 //                   OpenMS Mass Spectrometry Framework
00006 // --------------------------------------------------------------------------
00007 //  Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert
00008 //
00009 //  This library is free software; you can redistribute it and/or
00010 //  modify it under the terms of the GNU Lesser General Public
00011 //  License as published by the Free Software Foundation; either
00012 //  version 2.1 of the License, or (at your option) any later version.
00013 //
00014 //  This library is distributed in the hope that it will be useful,
00015 //  but WITHOUT ANY WARRANTY; without even the implied warranty of
00016 //  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
00017 //  Lesser General Public License for more details.
00018 //
00019 //  You should have received a copy of the GNU Lesser General Public
00020 //  License along with this library; if not, write to the Free Software
00021 //  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
00022 //
00023 // --------------------------------------------------------------------------
00024 // $Maintainer: Andreas Bertsch $
00025 // --------------------------------------------------------------------------
00026 //
00027 #ifndef OPENMS_COMPARISON_SPECTRA_SPECTRUMALIGNMENT_H
00028 #define OPENMS_COMPARISON_SPECTRA_SPECTRUMALIGNMENT_H
00029 
00030 #include <OpenMS/KERNEL/StandardTypes.h>
00031 #include <OpenMS/CONCEPT/FactoryProduct.h>
00032 
00033 #include <vector>
00034 #include <utility>
00035 
00036 namespace OpenMS
00037 {
00038 
00047   class SpectrumAlignment : public FactoryProduct
00048   {
00049   public:
00050   
00051     // @name Constructors and Destructors
00052     // @{
00054     SpectrumAlignment();
00055 
00057     SpectrumAlignment(const SpectrumAlignment& source);
00058 
00060     virtual ~SpectrumAlignment();
00061     // @}
00062 
00063     // @name Operators
00064     // @{
00066     SpectrumAlignment& operator = (const SpectrumAlignment& source);
00067     // @}
00068 
00069     // @name Accessors
00070     // @{
00072     
00074     static const String getProductName()
00075     {
00076       return "SpectrumAlignment";
00077     }
00078 
00079     //template <typename SpectrumType> void getSpectrumAlignment(std::vector<std::pair<UInt, UInt> >& alignment, const SpectrumType& s1, const SpectrumType& s2) const;
00080 
00081     // TODO code from this method into template method above and this method should simply call the method above
00082     void getSpectrumAlignment(std::vector<std::pair<UInt, UInt> >& alignment, const PeakSpectrum& s1, const PeakSpectrum& s2) const;
00083     // @}
00084 
00085   };
00086 
00087 }
00088 #endif //OPENMS_COMPARISON_SPECTRA_SPECTRUMALIGNMENT_H

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