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MzDataFile.h (Maintainer: Marc Sturm)

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00001 // -*- Mode: C++; tab-width: 2; -*-
00002 // vi: set ts=2:
00003 //
00004 // --------------------------------------------------------------------------
00005 //                   OpenMS Mass Spectrometry Framework
00006 // --------------------------------------------------------------------------
00007 //  Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert
00008 //
00009 //  This library is free software; you can redistribute it and/or
00010 //  modify it under the terms of the GNU Lesser General Public
00011 //  License as published by the Free Software Foundation; either
00012 //  version 2.1 of the License, or (at your option) any later version.
00013 //
00014 //  This library is distributed in the hope that it will be useful,
00015 //  but WITHOUT ANY WARRANTY; without even the implied warranty of
00016 //  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
00017 //  Lesser General Public License for more details.
00018 //
00019 //  You should have received a copy of the GNU Lesser General Public
00020 //  License along with this library; if not, write to the Free Software
00021 //  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
00022 //
00023 // --------------------------------------------------------------------------
00024 // $Maintainer: Marc Sturm $
00025 // --------------------------------------------------------------------------
00026 
00027 #ifndef OPENMS_FORMAT_MZDATAFILE_H
00028 #define OPENMS_FORMAT_MZDATAFILE_H
00029 
00030 #include <OpenMS/FORMAT/XMLFile.h>
00031 #include <OpenMS/FORMAT/PeakFileOptions.h>
00032 #include <OpenMS/FORMAT/HANDLERS/MzDataHandler.h>
00033 #include <OpenMS/CONCEPT/ProgressLogger.h>
00034 
00035 namespace OpenMS
00036 {
00042   class MzDataFile 
00043     : public Internal::XMLFile,
00044       public ProgressLogger
00045   {
00046     public:
00048       MzDataFile();
00050       ~MzDataFile();
00051       
00053       PeakFileOptions& getOptions();
00054 
00056       const PeakFileOptions& getOptions() const;
00057 
00063       template <typename MapType>
00064       void load(const String& filename, MapType& map) throw (Exception::FileNotFound, Exception::ParseError)
00065       {
00066         map.reset();
00067         
00068         Internal::MzDataHandler<MapType> handler(map,filename,schema_version_,*this);
00069         handler.setOptions(options_);
00070         parse_(filename, &handler);
00071       }
00072 
00078       template <typename MapType>
00079       void store(const String& filename, const MapType& map)
00080       const throw (Exception::UnableToCreateFile)
00081       {
00082         Internal::MzDataHandler<MapType> handler(map,filename,schema_version_,*this);
00083         handler.setOptions(options_);
00084         save_(filename, &handler);
00085       }
00086       
00087     private:
00088       PeakFileOptions options_;
00089   };
00090 
00091 } // namespace OpenMS
00092 
00093 #endif // OPENMS_FOMAT_MZXMLFILE_H

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