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Here is a list of all class members with links to the classes they belong to:
- i -
i :
IsotopeWavelet::fi_
Icon :
PeakIcon
ICP :
IonSource
id() :
BinnedRep
id_ :
PeptideIdentification
,
ProteinIdentification
,
BinnedRep
,
IdXMLFile
,
UniqueIdGenerator
id_data_ :
MascotXMLHandler
id_generator_ :
FeaturePairsHandler
identification_ :
SpectrumSettings
identification_date_ :
ProteinIdentificationVisualizer
identification_threshold_ :
PeptideIdentificationVisualizer
,
ProteinIdentificationVisualizer
identifications_ :
Feature
identifier_ :
MascotXMLHandler
,
PeptideIdentificationVisualizer
,
ProteinIdentificationVisualizer
identifyCharges() :
IsotopeWaveletTransform
IDFeatureMapper() :
IDFeatureMapper
IDFilter() :
IDFilter
IDSpectrumMapper() :
IDSpectrumMapper
IDXML :
FileHandler
IdXMLFile() :
IdXMLFile
ILLEGAL_PARAMETERS :
TOPPBase
IllegalArgument() :
IllegalArgument
IllegalKey() :
HashMap::IllegalKey
IllegalPosition() :
IllegalPosition
IllegalSelfOperation() :
IllegalSelfOperation
IllegalTreeOperation() :
IllegalTreeOperation
IM_LINEAR :
MultiGradient
IM_NONE :
SpectrumCanvas
IM_PERCENTAGE :
SpectrumCanvas
IM_SNAP :
SpectrumCanvas
IM_STAIRS :
MultiGradient
implode() :
String
in_description_ :
FeatureXMLHandler
,
MzDataHandler
inc() :
Histogram
INCOMPATIBLE_INPUT_DATA :
TOPPBase
IncompatibleIterators() :
IncompatibleIterators
index :
SimpleExtender::IndexWithPriority
,
Matrix
index2key() :
LinearInterpolation
index2key_0() :
BilinearInterpolation
index2key_1() :
BilinearInterpolation
index_ :
IndexUnderflow
,
IndexOverflow
,
SparseVector::DoubleProxy
,
SuffixArraySeqan
,
FeatureFinderDefs::NoSuccessor
index_to_description_ :
MetaInfoRegistry
index_to_name_ :
MetaInfoRegistry
index_to_unit_ :
MetaInfoRegistry
index_to_value_ :
MetaInfo
IndexOverflow() :
IndexOverflow
indexPair() :
Matrix
IndexPair :
IsotopeCluster
,
FeatureFinderDefs
IndexSet :
IsotopeCluster
,
FeatureFinderDefs
,
Fitter1D
IndexSetIter :
ModelFitter
IndexTuple :
ConsensusFeature
,
ConsensusPeak
,
IndexTuple
IndexUnderflow() :
IndexUnderflow
IndexWithPriority() :
SimpleExtender::IndexWithPriority
indices_ :
SuffixArrayTrypticCompressed
,
SimpleSeeder
INDUCTIVELYCOUPLEDPLASMA :
IonSource
info_ :
SpectrumCheapDPCorr
,
FeatureFinderAlgorithmPicked
INFUSION :
IonSource
ini_location_ :
TOPPBase
INIFileEditorWindow() :
INIFileEditorWindow
InIntensityRange() :
InIntensityRange
init() :
SignalToNoiseEstimator
,
IsotopeWavelet
,
ContinuousWaveletTransform
,
ContinuousWaveletTransformNumIntegration
init_() :
PeakPickerCWT
initGridTransformation() :
BasePairwiseMapMatcher
INITIAL_CAPACITY :
HashMap
INITIAL_NUMBER_OF_BUCKETS :
HashMap
initialize_() :
SimpleSeeder
initialized_ :
SimpleSeeder
initializeGL() :
Spectrum3DOpenGLCanvas
initializeWT_() :
PeakPickerCWT
initParameters_() :
SVMWrapper
inlet_type_ :
IonSource
INLETNULL :
IonSource
INLETTEMP :
ANDIHandler
InletType :
IonSource
InMSLevelRange() :
InMSLevelRange
InMzRange() :
InMzRange
input_1_name :
FuzzyStringComparator
input_2_name :
FuzzyStringComparator
input_combo_ :
ToolsDialog
INPUT_FILE :
TOPPBase::ParameterInformation
input_file_ :
FastaIterator
INPUT_FILE_CORRUPT :
TOPPBase
INPUT_FILE_EMPTY :
TOPPBase
INPUT_FILE_NOT_FOUND :
TOPPBase
INPUT_FILE_NOT_READABLE :
TOPPBase
input_string_ :
ToolsDialog
inputFileReadable_() :
TOPPBase
InRTRange() :
InRTRange
insert() :
Group
,
HashMap
,
Param::ParamNode
,
Param
,
ConsensusFeature
,
ConsensusPeak
,
DPeakConstReferenceArray
,
DSpectrum
,
MultiGradient
insertHit() :
PeptideIdentification
,
ProteinIdentification
insertmarker() :
MarkerMower
insertPair() :
ROCCurve
Inside :
DRange
inside_ :
LinearInterpolation
inside_0_ :
BilinearInterpolation
inside_1_ :
BilinearInterpolation
InspectInfile() :
InspectInfile
InspectOutfile() :
InspectOutfile
instance() :
UniqueIdGenerator
instance_() :
Factory
,
SingletonRegistry
instance_number_ :
TOPPBase
instance_ptr_ :
Factory
INSTCOMMENTS :
ANDIHandler
INSTFIRMWARE :
ANDIHandler
INSTID :
ANDIHandler
institution_ :
ContactPerson
INSTOS :
ANDIHandler
INSTPARAMS :
ANDIHandler
Instrument() :
Instrument
instrument_ :
InspectInfile
,
MascotInfile
,
ExperimentalSettings
,
HPLC
instrument_customizations_ :
InstrumentVisualizer
instrument_model_ :
InstrumentVisualizer
instrument_name_ :
InstrumentVisualizer
instrument_settings_ :
SpectrumSettings
instrument_vendor_ :
InstrumentVisualizer
InstrumentSettings() :
InstrumentSettings
instrumentsettings_mz_range_start_ :
InstrumentSettingsVisualizer
instrumentsettings_mz_range_stop_ :
InstrumentSettingsVisualizer
instrumentsettings_polarity_ :
InstrumentSettingsVisualizer
instrumentsettings_scan_mode_ :
InstrumentSettingsVisualizer
InstrumentSettingsVisualizer() :
InstrumentSettingsVisualizer
InstrumentVisualizer() :
InstrumentVisualizer
INSTSERIAL :
ANDIHandler
INSTSOFTWARE :
ANDIHandler
INT :
TOPPBase::ParameterInformation
int_ :
DataValue
,
ANDIHandler
int_label_ :
TOPPViewBase
int_range_ :
RangeManager
int_scale_ :
Spectrum3DOpenGLCanvas
INT_VALUE :
DataValue
integrate_() :
GaussFilter
,
ContinuousWaveletTransformNumIntegration
intens :
IsotopeWaveletTransform::BoxElement_
INTENSITY :
DataFilters
intensity :
FeatureFinderAlgorithmPicked::Seed
,
FeatureFinderAlgorithmPicked::TheoreticalIsotopePattern
,
FeatureFinderAlgorithmPicked::IsotopePattern
intensity_ :
DRawDataPoint
,
RawDataPoint1D
,
RawDataPoint2D
intensity_bins_ :
FeatureFinderAlgorithmPicked
intensity_cutoff_ :
ProcessingMethod
intensity_group_ :
TOPPViewBase
intensity_mode_ :
SpectrumCanvas
intensity_mz_step_ :
FeatureFinderAlgorithmPicked
intensity_percentage_ :
FeatureFinderAlgorithmPicked
intensity_percentage_optional_ :
FeatureFinderAlgorithmPicked
intensity_range_ :
PeakFileOptions
,
ConsensusFeature
,
ConsensusPeak
intensity_rt_step_ :
FeatureFinderAlgorithmPicked
intensity_score :
FeatureFinderAlgorithmPicked::PeakInfo
intensity_threshold_ :
SimpleExtender
intensity_thresholds_ :
FeatureFinderAlgorithmPicked
IntensityBalanceFilter() :
IntensityBalanceFilter
IntensityBoundingBoxType :
PoseClusteringAffineSuperimposer
,
PoseClusteringShiftSuperimposer
,
ConsensusFeature
,
ConsensusPeak
IntensityIterator() :
IntensityIterator
IntensityLess() :
IntensityLess
intensityModeChange_() :
Spectrum2DCanvas
,
Spectrum3DCanvas
,
SpectrumCanvas
,
SpectrumWidget
IntensityModes :
SpectrumCanvas
IntensityRangeType :
RangeManager
intensityScore_() :
FeatureFinderAlgorithmPicked
IntensityThresholdCalculation :
SignalToNoiseEstimatorMeanIterative
,
SignalToNoiseEstimatorMedian
IntensityType :
BaseModel
,
ModelFitter
,
BasePairFinder
,
MSExperiment
,
BaseSuperimposer
,
DelaunayPairFinder
,
PoseClusteringAffineSuperimposer
,
PoseClusteringShiftSuperimposer
,
SimplePairFinder
,
StarAlignment
,
ConsensusFeature
,
ConsensusPeak
,
DPeak
,
DRawDataPoint
,
RangeManager
,
RawDataPoint1D
,
RawDataPoint2D
,
ExtendedIsotopeModel
,
FeaFiModule
,
FeatureFinderAlgorithm
,
FeatureFinderAlgorithmPicked
,
InterpolationModel
,
IsotopeModel
,
LmaIsotopeModel
,
ProductModel
,
SimpleExtender
intercept_ :
LinearRegression
,
LinearMapping
Internal :
Residue
INTERNAL_ERROR :
TOPPBase
internal_formula_ :
Residue
InternalCalibration() :
InternalCalibration
interpolatedColorAt() :
MultiGradient
interpolation_ :
InterpolationModel
interpolation_mode_ :
MultiGradient
interpolation_step_ :
Fitter1D
,
InterpolationModel
interpolation_step_mz_ :
ModelFitter
interpolation_step_rt_ :
ModelFitter
InterpolationMode :
MultiGradient
InterpolationModel :
GaussModel
,
InterpolationModel
intersection_() :
FeatureFinderAlgorithmPicked
intersects() :
DRange
,
DBoundingBox
Intersects :
DRange
inv_table_steps_ :
IsotopeWavelet
invalidate_() :
HistogramWidget
InvalidIterator() :
InvalidIterator
InvalidParameter() :
InvalidParameter
InvalidQuery() :
DBConnection::InvalidQuery
InvalidRange() :
InvalidRange
InvalidSize() :
InvalidSize
InvalidValue() :
InvalidValue
inventory_ :
Factory
,
SingletonRegistry
inverse_orientation_ :
AxisWidget
ion_cutoff_percentage_ :
SequestInfile
ion_detector_ :
Instrument
ion_mass_tolerance_ :
MascotInfile
ion_series_weights_ :
SequestInfile
ion_source_ :
Instrument
IonDetector() :
IonDetector
iondetector_ac_mode_ :
IonDetectorVisualizer
iondetector_freq_ :
IonDetectorVisualizer
iondetector_res_ :
IonDetectorVisualizer
iondetector_type_ :
IonDetectorVisualizer
IonDetectorVisualizer() :
IonDetectorVisualizer
ionization_method_ :
IonSource
IonizationMethod :
IonSource
IONMETHODNULL :
IonSource
IONMODEADD :
ANDIHandler
IonSource() :
IonSource
ionsource_inlet_type_ :
IonSourceVisualizer
ionsource_ionization_method_ :
IonSourceVisualizer
ionsource_polarity_ :
IonSourceVisualizer
IonSourceVisualizer() :
IonSourceVisualizer
IONSTORAGE :
MassAnalyzer
is_absdiff_small :
FuzzyStringComparator
is_at_end_ :
EdwardsLippertIterator
,
TrypticIterator
,
FastaIterator
is_log_ :
AxisWidget
is_modified_ :
Residue
is_number_1 :
FuzzyStringComparator
is_number_2 :
FuzzyStringComparator
is_result_valid_ :
SignalToNoiseEstimator
is_running_ :
StopWatch
is_space_1 :
FuzzyStringComparator
is_space_2 :
FuzzyStringComparator
is_status_success :
FuzzyStringComparator
isAdvancedParameter() :
Param
isAtEnd() :
TrypticIterator
,
FastaIteratorIntern
,
EdwardsLippertIterator
,
PepIterator
,
FastaIterator
isCharged() :
EmpiricalFormula
isConnected() :
DBConnection
isContained() :
BaseModel
isDigestingEnd() :
TrypticIterator
,
EdwardsLippertIteratorTryptic
,
SuffixArray
,
EdwardsLippertIterator
,
SuffixArrayTrypticSeqan
,
SuffixArraySeqan
,
SuffixArrayTrypticCompressed
isEditable() :
DataTable
,
MSMetaDataExplorer
isEmpty() :
Group
,
DataValue
,
EmpiricalFormula
,
HashMap
,
DRange
,
DBoundingBox
IsEmptySpectrum() :
IsEmptySpectrum
isFileEmpty() :
SourceFile
isHigherScoreBetter() :
PeptideIdentification
,
ProteinIdentification
ISI :
IonSource
isInSpectrum_() :
EdwardsLippertIterator
isIntersected() :
DRange
isLegendShown() :
Spectrum3DCanvas
,
Spectrum3DWidget
,
SpectrumWidget
,
AxisWidget
isLogScale() :
AxisWidget
isMetaEmpty() :
MetaInfoInterface
isModified() :
ParamEditor
,
Residue
isMzToXAxis() :
SpectrumCanvas
isNewerThan() :
TimeStamp
iso_map_ :
TwoDOptimization
iso_stdev_first_ :
ModelFitter
iso_stdev_last_ :
ModelFitter
iso_stdev_stepsize_ :
ModelFitter
isolation_width_ :
MassAnalyzer
isOlderThan() :
TimeStamp
isOpenAsNewTab() :
OpenDialog
isotope_distance :
LmaIsotopeFitter1D::Data
isotope_distance_ :
IsotopeModel
,
ExtendedIsotopeModel
,
LmaIsotopeFitter1D
,
LmaIsotopeModel
isotope_distributions_ :
FeatureFinderAlgorithmPicked
isotope_stdev_ :
ModelFitter
,
ExtendedIsotopeModel
,
ExtendedIsotopeFitter1D
,
LmaIsotopeFitter1D
,
LmaIsotopeModel
,
IsotopeFitter1D
,
IsotopeModel
IsotopeCluster() :
IsotopeCluster
IsotopeDiffFilter() :
IsotopeDiffFilter
IsotopeDistribution() :
IsotopeDistribution
IsotopeFitter1D() :
IsotopeFitter1D
IsotopeMarker() :
IsotopeMarker
IsotopeModel() :
IsotopeModel
IsotopePattern() :
FeatureFinderAlgorithmPicked::IsotopePattern
isotopes_ :
Element
isotopes_exact :
LmaIsotopeFitter1D::Data
isotopes_exact_ :
LmaIsotopeFitter1D
isotopes_stdev :
LmaIsotopeFitter1D::Data
isotopeScore_() :
FeatureFinderAlgorithmPicked
IsotopeVariant :
Tagging
IsotopeWavelet() :
IsotopeWavelet
IsotopeWaveletTransform() :
IsotopeWaveletTransform
isRegistered() :
Factory
,
SingletonRegistry
isRunning() :
StopWatch
isSupported() :
FileHandler
isTooFarFromCentroid_() :
SimpleExtender
isValid() :
FeatureFinderAlgorithmPicked::MassTraces
,
Gradient
,
XMLFile
,
FeatureFinderAlgorithmPicked::MassTrace
,
XMLValidator
isViewMaps2D() :
OpenDialog
it_ :
FastaIteratorIntern
,
ConsensusXMLHandler
,
SuffixArraySeqan
IT_ASTERIX :
PeakIcon
IT_ELLIPSE :
PeakIcon
IT_NOICON :
PeakIcon
it_range_ :
ConsensusXMLHandler
IT_SQUARE :
PeakIcon
IT_TRIANGLE :
PeakIcon
Iterator :
DPosition
,
AASequence
iterator :
Grid
Iterator() :
HashMap::Iterator
iterator :
IsotopeDistribution
Iterator :
BinnedRep
,
IsotopeDistribution
iterator :
DPosition
,
BinnedRep
,
DSpectrum
Iterator :
SparseVector
,
Matrix
,
Grid
iterator :
HashMap
,
AASequence
Iterator :
ConsensusMap
,
DPeakConstReferenceArray
,
DSpectrum
,
MSExperiment
,
String
,
HashMap::Iterator
iterator :
DPeakConstReferenceArray
,
Matrix
,
Group
Iterator :
FeatureMap
iterator :
SparseVector
Iterator :
DPeakArray
,
TextFile
iterator_category :
DPeakConstReferenceArray::DPeakConstReferenceArrayConstIterator
,
HashMap::ConstIterator
,
HashMap::Iterator
IteratorPeakType :
DPeakConstReferenceArray::DPeakConstReferenceArrayConstIterator
,
DPeakConstReferenceArray::DPeakConstReferenceArrayIterator
iteratorRange2Arrays_() :
LinearRegression
iteratorRange3Arrays_() :
LinearRegression
Generated Tue Apr 1 15:36:41 2008 -- using doxygen 1.5.4
OpenMS / TOPP 1.1