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SpectrumAlignmentScore.h (Maintainer: Andreas Bertsch)

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00001 // -*- Mode: C++; tab-width: 2; -*-
00002 // vi: set ts=2:
00003 //
00004 // --------------------------------------------------------------------------
00005 //                   OpenMS Mass Spectrometry Framework
00006 // --------------------------------------------------------------------------
00007 //  Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert
00008 //
00009 //  This library is free software; you can redistribute it and/or
00010 //  modify it under the terms of the GNU Lesser General Public
00011 //  License as published by the Free Software Foundation; either
00012 //  version 2.1 of the License, or (at your option) any later version.
00013 //
00014 //  This library is distributed in the hope that it will be useful,
00015 //  but WITHOUT ANY WARRANTY; without even the implied warranty of
00016 //  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
00017 //  Lesser General Public License for more details.
00018 //
00019 //  You should have received a copy of the GNU Lesser General Public
00020 //  License along with this library; if not, write to the Free Software
00021 //  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
00022 //
00023 // --------------------------------------------------------------------------
00024 // $Maintainer: Andreas Bertsch $
00025 // --------------------------------------------------------------------------
00026 //
00027 #ifndef OPENMS_COMPARISON_SPECTRA_SPECTRUMALIGNMENTSCORE_H
00028 #define OPENMS_COMPARISON_SPECTRA_SPECTRUMALIGNMENTSCORE_H
00029 
00030 #include <OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h>
00031 
00032 namespace OpenMS
00033 {
00034 
00054   class SpectrumAlignmentScore : public PeakSpectrumCompareFunctor
00055   {
00056   public:
00057   
00058     // @name Constructors and Destructors
00059     // @{
00061     SpectrumAlignmentScore();
00062 
00064     SpectrumAlignmentScore(const SpectrumAlignmentScore& source);
00065 
00067     virtual ~SpectrumAlignmentScore();
00068     // @}
00069 
00070     // @name Operators
00071     // @{
00073     SpectrumAlignmentScore& operator = (const SpectrumAlignmentScore& source);
00074   
00076     double operator () (const PeakSpectrum& spec1, const PeakSpectrum& spec2) const;
00077 
00078     double operator () (const PeakSpectrum& spec) const;
00079     // @}
00080 
00081     // @name Accessors
00082     // @{
00084     static PeakSpectrumCompareFunctor* create() { return new SpectrumAlignmentScore(); }
00085 
00087     static const String getProductName()
00088     {
00089       return "SpectrumAlignmentScore";
00090     }
00091     // @}
00092 
00093   };
00094 
00095 }
00096 #endif //OPENMS_COMPARISON_SPECTRA_SPECTRUMALIGNMENTSCORE_H

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