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ConsensusXMLHandler Member List

This is the complete list of members for ConsensusXMLHandler, including all inherited members.

act_cons_element_ConsensusXMLHandler [protected]
asBool_(const String &in)XMLHandler [inline, protected]
asDateTime_(const String &in)XMLHandler [inline, protected]
asDouble_(const String &in)XMLHandler [inline, protected]
asFloat_(const String &in)XMLHandler [inline, protected]
asInt_(const String &in)XMLHandler [inline, protected]
asInt_(const XMLCh *in)XMLHandler [inline, protected]
asUInt_(const String &in)XMLHandler [inline, protected]
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
attributeAsInt_(const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
attributeAsString_(const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
calignment_ConsensusXMLHandler [protected]
characters(const XMLCh *const chars, unsigned int length)ConsensusXMLHandler [inline, virtual]
consensus_element_range_ConsensusXMLHandler [protected]
consensus_map_ConsensusXMLHandler [protected]
consensus_map_flag_ConsensusXMLHandler [protected]
ConsensusElementType typedefConsensusXMLHandler
ConsensusXMLHandler(ConsensusMap< ConsensusElementType > &consensus_map, const String &filename, const String &version, bool load_elements_maps=true)ConsensusXMLHandler [inline]
ConsensusXMLHandler(const StarAlignment< ConsensusElementType > &alignment, const String &filename, const String &version)ConsensusXMLHandler [inline]
cv_terms_XMLHandler [protected]
cvStringToEnum_(UInt section, const String &term, const char *message)XMLHandler [inline, protected]
ElementContainerType typedefConsensusXMLHandler
ElementType typedefConsensusXMLHandler
endElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname)ConsensusXMLHandler [inline, virtual]
equal_(const XMLCh *a, const XMLCh *b)XMLHandler [inline, protected]
error(const xercesc::SAXParseException &exception)XMLHandler
error(const String &msg, UInt line=0, UInt column=0) const XMLHandler
error_message_XMLHandler [mutable, protected]
errorString()XMLHandler
fatalError(const xercesc::SAXParseException &exception)XMLHandler
fatalError(const String &msg, UInt line=0, UInt column=0) const XMLHandler
feature_map_flag_ConsensusXMLHandler [protected]
file_XMLHandler [protected]
it_ConsensusXMLHandler [protected]
it_range_ConsensusXMLHandler [protected]
load_elements_maps_ConsensusXMLHandler [protected]
loadFile_(const String &, UInt, const ConsensusElementT &)ConsensusXMLHandler [inline, protected]
loadFile_(const String &file_name, UInt id, const ConsensusFeature< FeatureMap< > > &)ConsensusXMLHandler [inline]
loadFile_(const String &file_name, UInt id, const ConsensusPeak< DPeakArray< Peak2D > > &)ConsensusXMLHandler [inline]
loadFile_(const String &file_name, UInt id, const ConsensusFeature< ConsensusMap< ConsensusFeature< FeatureMap< > > > > &)ConsensusXMLHandler [inline]
open_tags_XMLHandler [protected]
optionalAttributeAsDouble_(DoubleReal &value, const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
optionalAttributeAsDouble_(DoubleReal &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
pos_ConsensusXMLHandler [protected]
pos_range_ConsensusXMLHandler [protected]
PositionType typedefConsensusXMLHandler
sm_XMLHandler [protected]
startElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname, const xercesc::Attributes &attributes)ConsensusXMLHandler [inline, virtual]
version_XMLHandler [protected]
warning(const xercesc::SAXParseException &exception)XMLHandler
warning(const String &msg, UInt line=0, UInt column=0) const XMLHandler
writeCellList_(std::ostream &os, const Grid &grid)ConsensusXMLHandler [inline, protected]
writeCVS_(std::ostream &os, DoubleReal value, const String &acc, const String &name, int indent=4) const XMLHandler [inline, protected]
writeCVS_(std::ostream &os, const String &value, const String &acc, const String &name, int indent=4) const XMLHandler [inline, protected]
writeCVS_(std::ostream &os, int value, int map, const String &acc, const String &name, int indent=4)XMLHandler [protected]
writeTo(std::ostream &os)ConsensusXMLHandler [inline, virtual]
writeUserParam_(std::ostream &os, const MetaInfoInterface &meta, int indent=4)XMLHandler [inline, protected]
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const XMLHandler [protected]
XMLHandler(const String &filename, const String &version)XMLHandler
~ConsensusXMLHandler()ConsensusXMLHandler [inline, virtual]
~XMLHandler()XMLHandler [virtual]


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