#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h>
Public Types | |
typedef MSExperiment< PeakType > | MapType |
Input map type. | |
typedef MapType::CoordinateType | CoordinateType |
Coordinate/Position type of peaks. | |
typedef MapType::IntensityType | IntensityType |
Intensity type of peaks. | |
typedef FeatureMap< FeatureType > | FeatureMapType |
Output feature type. | |
Public Member Functions | |
FeatureFinderAlgorithm () | |
default constructor | |
virtual | ~FeatureFinderAlgorithm () |
destructor | |
virtual void | run ()=0 |
Main method that implements the actual algorithm. | |
virtual Param | getDefaultParameters () const |
Returns the default parameters. Reimplment. | |
void | setData (const MapType &map, FeatureMapType &features, FeatureFinder &ff) |
Sets a reference to the calling FeatureFinder. | |
Static Public Member Functions | |
static void | registerChildren () |
register all derived classes here (see FeatureFinderAlgorithm_impl.h) | |
Protected Attributes | |
const MapType * | map_ |
Input data pointer. | |
FeatureMapType * | features_ |
Output data pointer. | |
FeatureFinder * | ff_ |
Pointer to the calling FeatureFinder that is used to access the feature flags. | |
Private Member Functions | |
FeatureFinderAlgorithm & | operator= (const FeatureFinderAlgorithm &) |
Not implemented. | |
FeatureFinderAlgorithm (const FeatureFinderAlgorithm &) | |
Not implemented. |
typedef MSExperiment<PeakType> MapType |
typedef MapType::IntensityType IntensityType |
typedef FeatureMap<FeatureType> FeatureMapType |
Output feature type.
FeatureFinderAlgorithm | ( | ) | [inline] |
default constructor
virtual ~FeatureFinderAlgorithm | ( | ) | [inline, virtual] |
destructor
FeatureFinderAlgorithm | ( | const FeatureFinderAlgorithm< PeakType, FeatureType > & | ) | [private] |
Not implemented.
void registerChildren | ( | ) | [inline, static] |
register all derived classes here (see FeatureFinderAlgorithm_impl.h)
virtual void run | ( | ) | [pure virtual] |
Main method that implements the actual algorithm.
Implemented in FeatureFinderAlgorithmPicked, FeatureFinderAlgorithmSimple, and FeatureFinderAlgorithmSimplest.
virtual Param getDefaultParameters | ( | ) | const [inline, virtual] |
Returns the default parameters. Reimplment.
Reimplment if you derive a class and have to incoopreate sub-algorithm default parameters.
Reimplemented in FeatureFinderAlgorithmSimple, and FeatureFinderAlgorithmSimplest.
void setData | ( | const MapType & | map, | |
FeatureMapType & | features, | |||
FeatureFinder & | ff | |||
) | [inline] |
Sets a reference to the calling FeatureFinder.
FeatureFinderAlgorithm& operator= | ( | const FeatureFinderAlgorithm< PeakType, FeatureType > & | ) | [private] |
Not implemented.
FeatureMapType* features_ [protected] |
Output data pointer.
FeatureFinder* ff_ [protected] |
Pointer to the calling FeatureFinder that is used to access the feature flags.
Generated Tue Apr 1 15:36:47 2008 -- using doxygen 1.5.4 | OpenMS / TOPP 1.1 |