00001 // -*- Mode: C++; tab-width: 2; -*- 00002 // vi: set ts=2: 00003 // 00004 // -------------------------------------------------------------------------- 00005 // OpenMS Mass Spectrometry Framework 00006 // -------------------------------------------------------------------------- 00007 // Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert 00008 // 00009 // This library is free software; you can redistribute it and/or 00010 // modify it under the terms of the GNU Lesser General Public 00011 // License as published by the Free Software Foundation; either 00012 // version 2.1 of the License, or (at your option) any later version. 00013 // 00014 // This library is distributed in the hope that it will be useful, 00015 // but WITHOUT ANY WARRANTY; without even the implied warranty of 00016 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU 00017 // Lesser General Public License for more details. 00018 // 00019 // You should have received a copy of the GNU Lesser General Public 00020 // License along with this library; if not, write to the Free Software 00021 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00022 // 00023 // -------------------------------------------------------------------------- 00024 // $Maintainer: Andreas Bertsch $ 00025 // -------------------------------------------------------------------------- 00026 00027 #ifndef OPENMS_FORMAT_HANDLERS_OMSSAXMLHANDLER_H 00028 #define OPENMS_FORMAT_HANDLERS_OMSSAXMLHANDLER_H 00029 00030 #include <OpenMS/FORMAT/HANDLERS/XMLHandler.h> 00031 #include <OpenMS/METADATA/ProteinIdentification.h> 00032 #include <OpenMS/METADATA/PeptideIdentification.h> 00033 00034 #include <vector> 00035 00036 namespace OpenMS 00037 { 00038 namespace Internal 00039 { 00044 class OMSSAXMLHandler: 00045 public XMLHandler 00046 { 00047 public: 00048 00050 OMSSAXMLHandler(ProteinIdentification& protein_identification, std::vector<PeptideIdentification>& peptide_identifications, const String& filename); 00051 00053 virtual ~OMSSAXMLHandler(); 00054 00055 // Docu in base class 00056 void endElement(const XMLCh* const /*uri*/, const XMLCh* const /*local_name*/, const XMLCh* const qname); 00057 00058 // Docu in base class 00059 void startElement(const XMLCh* const /*uri*/, const XMLCh* const /*local_name*/, const XMLCh* const qname, const xercesc::Attributes& attributes); 00060 00061 // Docu in base class 00062 void characters(const XMLCh* const chars, unsigned int /*length*/); 00063 00064 private: 00065 00067 ProteinIdentification& protein_identification_; 00068 00070 std::vector<PeptideIdentification>& peptide_identifications_; 00071 00072 ProteinHit actual_protein_hit_; 00073 00074 PeptideHit actual_peptide_hit_; 00075 00076 PeptideIdentification actual_peptide_id_; 00077 00078 ProteinIdentification actual_protein_id_; 00079 00080 String tag_; 00081 }; 00082 00083 } // namespace Internal 00084 } // namespace OpenMS 00085 00086 #endif // OPENMS_FORMAT_HANDLERS_OMSSAXMLHANDLER_H 00087
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