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Here is a list of all class members with links to the classes they belong to:
- a -
a_ :
TOFCalibration
AA :
Modification
aa_after_ :
PeptideHit
AA_AT_CTERM :
Modification
AA_AT_NTERM :
Modification
aa_before_ :
PeptideHit
aamass_ :
GoodDiffFilter
aas_single_letter_ :
SequestInfile
AASequence() :
AASequence
abort_() :
FeatureFinderAlgorithmPicked
aborts_ :
FeatureFinderAlgorithmPicked
aboutToBeDestroyed() :
SpectrumWidget
abs_error_ :
LevMarqFitter1D
absdiff_max :
FuzzyStringComparator
absdiff_max_allowed :
FuzzyStringComparator
absolutePath() :
File
acc_ :
TOFCalibration
,
IsotopeWaveletTransform
accession_ :
ProteinHit
ACCPOT :
ANDIHandler
accuracy_ :
MassAnalyzer
ACQMODENULL :
IonDetector
Acquisition() :
Acquisition
acquisition_info_ :
SpectrumSettings
acquisition_mode_ :
IonDetector
AcquisitionInfo() :
AcquisitionInfo
acquisitioninfo_method_ :
AcquisitionInfoVisualizer
AcquisitionInfoVisualizer() :
AcquisitionInfoVisualizer
AcquisitionMode :
IonDetector
acquisitionnumber_ :
AcquisitionVisualizer
AcquisitionVisualizer() :
AcquisitionVisualizer
act_cons_element_ :
ConsensusXMLHandler
action_group_ :
TOPPViewBase
action_mode_ :
SpectrumCanvas
ActionModes :
SpectrumCanvas
activateLayer() :
Spectrum1DCanvas
,
Spectrum2DCanvas
,
Spectrum3DCanvas
,
SpectrumCanvas
activatePrecalculationMode() :
MultiGradient
activation_energy_ :
Precursor
activation_energy_unit_ :
Precursor
activation_method_ :
Precursor
ActivationMethod :
Precursor
active1DWindow_() :
TOPPViewBase
active2DWindow_() :
TOPPViewBase
active3DWindow_() :
TOPPViewBase
activeCanvas_() :
TOPPViewBase
activeLayerIndex() :
SpectrumCanvas
activeWindow_() :
TOPPViewBase
ACTMETHNULL :
Precursor
actual_pep_ :
EdwardsLippertIterator
,
TrypticIterator
actual_peptide_hit_ :
MascotXMLHandler
,
OMSSAXMLHandler
actual_peptide_id_ :
OMSSAXMLHandler
actual_protein_hit_ :
OMSSAXMLHandler
,
MascotXMLHandler
actual_protein_id_ :
OMSSAXMLHandler
actual_query_ :
MascotXMLHandler
actual_seq_ :
FastaIterator
adapter_ :
DBSpectrumSelectorDialog
ADC :
IonDetector
ADC_sampling_frequency_ :
IonDetector
add() :
BigString
,
DataFilters
,
AveragePosition
add2Buttons() :
DataTable
add_() :
MetaInfoVisualizer
add_average_weight_ :
ResidueModification
add_eluent_button_ :
GradientVisualizer
add_formula_ :
ResidueModification
add_mono_weight_ :
ResidueModification
add_timepoint_button_ :
GradientVisualizer
addBooleanComboBox() :
DataTable
addButton() :
DataTable
addbutton_ :
MetaInfoVisualizer
addComboBox() :
DataTable
addConvexHull() :
FeaFiModule
addDBSpectrum() :
TOPPViewBase
addDoubleLineEdit() :
DataTable
addEluent() :
Gradient
,
GradientVisualizer
addEmptyLine_() :
TOPPBase
addEmptyPeakLayer() :
SpectrumCanvas
addEnzymeInfo() :
SequestInfile
addIntLineEdit() :
DataTable
addLabel() :
DataTable
addLabel_() :
DataTable
addLayer() :
SpectrumCanvas
addLineEdit() :
DataTable
addLineEditButton() :
DataTable
addMSLevel() :
PeakFileOptions
addPeak_() :
PeakPickerCWT
addPeaks() :
TheoreticalSpectrumGenerator
addPoint() :
ConvexHull2D
addPrecursorPeaks() :
TheoreticalSpectrumGenerator
addProteinAccession() :
PeptideHit
addProteinIdentification() :
ExperimentalSettings
addRecentFile_() :
TOPPViewBase
addResidue() :
ResidueDB
addResidueModification() :
ResidueDB
address() :
ExternalAllocator
addSeperator() :
DataTable
addSpectrum() :
TOPPViewBase
addSynonym() :
Residue
,
ResidueModification
addTab_() :
TOPPViewBase
addText_() :
TOPPBase
addTextEdit() :
DataTable
addTimepoint() :
Gradient
,
GradientVisualizer
addTreatment() :
Sample
addValidResidue() :
ResidueModification
addValue() :
BilinearInterpolation
,
LinearInterpolation
addVSpacer() :
DataTable
adjustBuffer_() :
SpectrumCanvas
advanced :
Param::ParamEntry
ADVANCED_ITEM :
ParamEditor
advanced_mode_ :
ParamEditor
advanceFilesize() :
ExternalAllocatorUnique
advanceNextfree() :
ExternalAllocatorUnique
affected_amino_acids_ :
Modification
AffineTransformationMapType :
PoseClusteringAffineSuperimposer
AffineTransformationType :
PoseClusteringAffineSuperimposer
AIon :
Residue
algorithm_ :
ModelFitter
alignment_ :
AxisWidget
ALIGNMENT_ENUM :
AxisWidget
alignMultipleConsensusMaps_() :
StarAlignment
alignMultipleFeatureMaps_() :
StarAlignment
alignMultiplePeakMaps_() :
StarAlignment
all_element_pairs_ :
BasePairwiseMapMatcher
alloc_ :
MSExperiment
allocate() :
ExternalAllocator
allocator_type :
Matrix
AllocatorType :
Matrix
AllocType :
DPeakArray
allow_short_numbers_ :
AxisWidget
AM_SELECT :
SpectrumCanvas
AM_ZOOM :
SpectrumCanvas
ANALYZERNULL :
MassAnalyzer
AnalyzerType :
MassAnalyzer
ANDI_ERROR :
ANDIHandler
ANDIFile() :
ANDIFile
ANDIHandler() :
ANDIHandler
ANDIMS :
FileHandler
annotate() :
IDFeatureMapper
,
IDSpectrumMapper
annotateWithID() :
TOPPViewBase
APCI :
IonSource
API :
IonSource
APPI :
IonSource
apply() :
ParentFilter
,
ConsensusID
,
LinearMapping
,
ComplementFilter
,
FilterFunctor
,
GoodDiffFilter
,
IntensityBalanceFilter
,
IsotopeMarker
,
NeutralLossDiffFilter
,
NeutralLossMarker
,
PeakDensityFilter
,
PeakMarker
,
TICFilter
,
IsotopeDiffFilter
,
ComplementMarker
applyLogTransformation() :
Histogram
applyTOFConversion_() :
TOFCalibration
area :
PeakShape
area_ :
PickedPeak1D
,
Spectrum3DCanvas
areaBegin() :
MSExperiment
areaBeginConst() :
MSExperiment
areaEnd() :
MSExperiment
areaEndConst() :
MSExperiment
AreaIterator() :
AreaIterator
,
MSExperiment
,
AreaIterator
AreaType :
SpectrumCanvas
,
MSExperiment
arg_map_ :
ToolsDialog
arg_param_ :
ToolsDialog
argument :
TOPPBase::ParameterInformation
Arity :
DelaunayPairFinder::GeometricTraits::Construct_center_2
array_name_ :
MzDataHandler
asBool_() :
XMLHandler
asDateTime_() :
XMLHandler
asDouble_() :
XMLHandler
asFloat_() :
XMLHandler
asInt_() :
XMLHandler
assign() :
DPeakConstReferenceArray
,
DIntervalBase
,
DSpectrum
,
DPeakConstReferenceArray
,
DSpectrum
assignRanks() :
ProteinIdentification
,
PeptideIdentification
assignReferenceMap_() :
StarAlignment
asString() :
TextFile
asUInt_() :
XMLHandler
AsymmetricStatistics() :
AsymmetricStatistics
at() :
SparseVector
atomic_number_ :
Element
atomic_numbers_ :
ElementDB
attributeAsDouble_() :
XMLHandler
attributeAsInt_() :
XMLHandler
attributeAsString_() :
XMLHandler
AUC() :
ROCCurve
auto_max_percentile_ :
SignalToNoiseEstimatorMeanIterative
,
SignalToNoiseEstimatorMedian
auto_max_stdev_Factor_ :
SignalToNoiseEstimatorMeanIterative
,
SignalToNoiseEstimatorMedian
auto_mode_ :
SignalToNoiseEstimatorMeanIterative
,
SignalToNoiseEstimatorMedian
AUTOMAXBYPERCENT :
SignalToNoiseEstimatorMeanIterative
,
SignalToNoiseEstimatorMedian
AUTOMAXBYSTDEV :
SignalToNoiseEstimatorMedian
,
SignalToNoiseEstimatorMeanIterative
av_MZ_spacing_ :
IsotopeWaveletTransform
AVERAGE :
ProteinIdentification
average_() :
ConsensusID
average_weight_ :
Residue
,
Element
averageCoefficients_() :
TOFCalibration
averageErrors_() :
TOFCalibration
AveragePosition() :
AveragePosition
averagine_ :
ExtendedIsotopeModel
,
IsotopeWavelet
,
LmaIsotopeModel
,
LmaIsotopeFitter1D
,
IsotopeModel
AVERAGINE_NUM :
LmaIsotopeModel
,
LmaIsotopeFitter1D
,
ExtendedIsotopeModel
,
IsotopeModel
Averagines :
IsotopeModel
,
LmaIsotopeFitter1D
,
LmaIsotopeModel
,
ExtendedIsotopeModel
avg :
LayerStatisticsDialog::MetaStatsValue_
avg_charge_ :
LayerStatisticsDialog
avg_intensity_ :
LayerStatisticsDialog
avg_quality_ :
LayerStatisticsDialog
axes_ :
Spectrum3DOpenGLCanvas
axes_ticks_ :
Spectrum3DOpenGLCanvas
AXIALEJECTIONLINEARIONTRAP :
MassAnalyzer
AxisTickCalculator() :
AxisTickCalculator
AxisTickVector :
Spectrum3DOpenGLCanvas
AxisWidget() :
AxisWidget
Generated Tue Apr 1 15:36:41 2008 -- using doxygen 1.5.4
OpenMS / TOPP 1.1