addConvexHull(const FeatureFinderDefs::IndexSet &set, Feature &feature) const | FeaFiModule | [inline] |
Base typedef | SimpleExtender | |
boundary_ | SimpleExtender | [protected] |
ChargedIndexSet typedef | FeatureFinderDefs | |
check_defaults_ | DefaultParamHandler | [protected] |
checkNeighbour_(const IndexPair &index) | SimpleExtender | [inline, protected] |
computePeakPriority_(const IndexPair &index) | SimpleExtender | [inline, protected] |
CoordinateType typedef | SimpleExtender | |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | [protected] |
defaultsToParam_() | DefaultParamHandler | [protected] |
dist_mz_down_ | SimpleExtender | [protected] |
dist_mz_up_ | SimpleExtender | [protected] |
dist_rt_down_ | SimpleExtender | [protected] |
dist_rt_up_ | SimpleExtender | [protected] |
error_name_ | DefaultParamHandler | [protected] |
extend(const ChargedIndexSet &seed_region, ChargedIndexSet &result_region) | SimpleExtender | [inline] |
FeaFiModule(const MSExperiment< PeakType > *map, FeatureMap< FeatureType > *features, FeatureFinder *ff) | FeaFiModule | [inline] |
FeatureMapType typedef | FeaFiModule | |
features_ | FeaFiModule | [protected] |
ff_ | FeaFiModule | [protected] |
Flag enum name | FeatureFinderDefs | |
getDefaults() const | DefaultParamHandler | |
getName() const | DefaultParamHandler | |
getNextMz(FeatureFinderDefs::IndexPair &index) const | FeaFiModule | [inline] |
getNextRt(FeatureFinderDefs::IndexPair &index) | FeaFiModule | [inline] |
getParameters() const | DefaultParamHandler | |
getPeakIntensity(const FeatureFinderDefs::IndexPair &index) const | FeaFiModule | [inline] |
getPeakMz(const FeatureFinderDefs::IndexPair &index) const | FeaFiModule | [inline] |
getPeakRt(const FeatureFinderDefs::IndexPair &index) const | FeaFiModule | [inline] |
getPrevMz(FeatureFinderDefs::IndexPair &index) const | FeaFiModule | [inline] |
getPrevRt(FeatureFinderDefs::IndexPair &index) | FeaFiModule | [inline] |
getSubsections() const | DefaultParamHandler | |
IndexPair typedef | FeatureFinderDefs | |
IndexSet typedef | FeatureFinderDefs | |
intensity_threshold_ | SimpleExtender | [protected] |
IntensityType typedef | SimpleExtender | |
isTooFarFromCentroid_(const IndexPair &index) | SimpleExtender | [inline, protected] |
last_pos_extracted_ | SimpleExtender | [protected] |
map_ | FeaFiModule | [protected] |
MapType typedef | FeaFiModule | |
moveMzDown_(const IndexPair &index) | SimpleExtender | [inline, protected] |
moveMzUp_(const IndexPair &index) | SimpleExtender | [inline, protected] |
moveRtDown_(const IndexPair &index) | SimpleExtender | [inline, protected] |
moveRtUp_(const IndexPair &index) | SimpleExtender | [inline, protected] |
operator=(const SimpleExtender &) | SimpleExtender | [private] |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
param_ | DefaultParamHandler | [protected] |
priorities_ | SimpleExtender | [protected] |
priority_threshold_ | SimpleExtender | [protected] |
ProbabilityType typedef | SimpleExtender | |
region_ | SimpleExtender | [protected] |
running_avg_ | SimpleExtender | [protected] |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
SimpleExtender(const MSExperiment< PeakType > *map, FeatureMap< FeatureType > *features, FeatureFinder *ff) | SimpleExtender | [inline] |
SimpleExtender() | SimpleExtender | [private] |
SimpleExtender(const SimpleExtender &) | SimpleExtender | [private] |
SpectrumType typedef | FeaFiModule | |
subsections_ | DefaultParamHandler | [protected] |
UNUSED enum value | FeatureFinderDefs | |
updateMembers_() | SimpleExtender | [inline, protected, virtual] |
USED enum value | FeatureFinderDefs | |
writeDebugFile_(const std::vector< IndexPair > &peaks, UInt nr_feat) | SimpleExtender | [inline, protected] |
~DefaultParamHandler() | DefaultParamHandler | [virtual] |
~FeaFiModule() | FeaFiModule | [inline, virtual] |
~SimpleExtender() | SimpleExtender | [inline, virtual] |