check_defaults_ | DefaultParamHandler | [protected] |
ClusterIdxType typedef | HierarchicalClustering | |
ClusterIdxVectorType typedef | HierarchicalClustering | |
clustermap_ | HierarchicalClustering | [protected] |
ClusterPointType typedef | HierarchicalClustering | |
COMPLETE_LINKAGE enum value | HierarchicalClustering | |
compute(const std::vector< ClusterPointType > &points) | HierarchicalClustering | [inline] |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | [protected] |
defaultsToParam_() | DefaultParamHandler | [protected] |
DistanceLineType typedef | HierarchicalClustering | |
DistanceMatrixType typedef | HierarchicalClustering | |
error_name_ | DefaultParamHandler | [protected] |
getClusters() const | HierarchicalClustering | [inline] |
getDefaults() const | DefaultParamHandler | |
getDistance_(const ClusterPointType &a, const ClusterPointType &b) | HierarchicalClustering | [inline, protected] |
getMinDistance_(const DistanceMatrixType &distanceMatrix, double &minDistance, uint &minRow, uint &minColumn) | HierarchicalClustering | [inline, protected] |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getSubsections() const | DefaultParamHandler | |
HierarchicalClustering() | HierarchicalClustering | [inline] |
HierarchicalClustering(const HierarchicalClustering &source) | HierarchicalClustering | [inline] |
LINKAGE_TYPE enum name | HierarchicalClustering | |
linkageComplete_(DistanceMatrixType &distanceMatrix, const uint &minRow, const uint &minColumn) | HierarchicalClustering | [inline, protected] |
linkageSingle_(DistanceMatrixType &distanceMatrix, const uint &minRow, const uint &minColumn) | HierarchicalClustering | [inline, protected] |
operator=(const HierarchicalClustering &source) | HierarchicalClustering | [inline] |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
param_ | DefaultParamHandler | [protected] |
printStatistics(std::ostream &os) | HierarchicalClustering | [inline] |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
SINGLE_LINKAGE enum value | HierarchicalClustering | |
subsections_ | DefaultParamHandler | [protected] |
updateMembers_() | DefaultParamHandler | [protected, virtual] |
~DefaultParamHandler() | DefaultParamHandler | [virtual] |
~HierarchicalClustering() | HierarchicalClustering | [inline, virtual] |