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ResidueDB Member List
This is the complete list of members for
ResidueDB
, including all inherited members.
addResidue
(const Residue &residue)
ResidueDB
addResidueModification
(ResidueModification modification)
ResidueDB
beginResidue
()
ResidueDB
[inline]
beginResidue
() const
ResidueDB
[inline]
beginResidueModification
()
ResidueDB
[inline]
beginResidueModification
() const
ResidueDB
[inline]
buildModifiedResidues_
()
ResidueDB
[protected]
buildResidueModificationNames_
()
ResidueDB
[protected]
buildResidueNames_
()
ResidueDB
[protected]
clear_
()
ResidueDB
[protected]
clearResidueModifications_
()
ResidueDB
[protected]
clearResidues_
()
ResidueDB
[protected]
const_modifications_
ResidueDB
[protected]
const_residues_
ResidueDB
[protected]
endResidue
()
ResidueDB
[inline]
endResidue
() const
ResidueDB
[inline]
endResidueModification
()
ResidueDB
[inline]
endResidueModification
() const
ResidueDB
[inline]
getModification
(const String &name) const
ResidueDB
getModifications
(const Residue *residue) const
ResidueDB
getModifications
(const String &res_name) const
ResidueDB
getModifications
() const
ResidueDB
getNumberOfResidueModifications
() const
ResidueDB
getNumberOfResidues
() const
ResidueDB
getResidue
(const String &name) const
ResidueDB
getResidues
(const ResidueModification *modification) const
ResidueDB
getResidues
(const String &mod_name) const
ResidueDB
getResidues
() const
ResidueDB
hasResidue
(const String &name) const
ResidueDB
hasResidueModification
(const String &name) const
ResidueDB
modification_names_
ResidueDB
[protected]
modifications_
ResidueDB
[protected]
operator!=
(const ResidueDB &rhs) const
ResidueDB
operator=
(const ResidueDB &aa)
ResidueDB
operator==
(const ResidueDB &rhs) const
ResidueDB
parseResidue_
(HashMap< String, String > &values)
ResidueDB
[protected]
readResidueModificationsFromFile_
(const String &filename)
ResidueDB
[protected]
readResiduesFromFile_
(const String &filename)
ResidueDB
[protected]
residue_names_
ResidueDB
[protected]
ResidueConstIterator
typedef
ResidueDB
ResidueDB
()
ResidueDB
ResidueDB
(const ResidueDB &residue_db)
ResidueDB
ResidueDB
(const String &res_filename, const String &mod_filename)
ResidueDB
ResidueIterator
typedef
ResidueDB
ResidueModificationConstIterator
typedef
ResidueDB
ResidueModificationIterator
typedef
ResidueDB
residues_
ResidueDB
[protected]
setModifications
(const String &filename)
ResidueDB
setResidues
(const String &filename)
ResidueDB
~ResidueDB
()
ResidueDB
[virtual]
Generated Tue Apr 1 15:36:43 2008 -- using doxygen 1.5.4
OpenMS / TOPP 1.1