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MascotXMLHandler.h (Maintainer: Nico Pfeifer)

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00001 // -*- Mode: C++; tab-width: 2; -*-
00002 // vi: set ts=2:
00003 //
00004 // --------------------------------------------------------------------------
00005 //                   OpenMS Mass Spectrometry Framework
00006 // --------------------------------------------------------------------------
00007 //  Copyright (C) 2003-2008 -- Oliver Kohlbacher, Knut Reinert
00008 //
00009 //  This library is free software; you can redistribute it and/or
00010 //  modify it under the terms of the GNU Lesser General Public
00011 //  License as published by the Free Software Foundation; either
00012 //  version 2.1 of the License, or (at your option) any later version.
00013 // 
00014 //  This library is distributed in the hope that it will be useful,
00015 //  but WITHOUT ANY WARRANTY; without even the implied warranty of
00016 //  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
00017 //  Lesser General Public License for more details.
00018 //
00019 //  You should have received a copy of the GNU Lesser General Public
00020 //  License along with this library; if not, write to the Free Software
00021 //  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
00022 //
00023 // --------------------------------------------------------------------------
00024 // $Maintainer: Nico Pfeifer $
00025 // --------------------------------------------------------------------------
00026 
00027 #ifndef OPENMS_FORMAT_HANDLERS_MASCOTXMLHANDLER_H
00028 #define OPENMS_FORMAT_HANDLERS_MASCOTXMLHANDLER_H
00029 
00030 #include <OpenMS/FORMAT/HANDLERS/XMLHandler.h>
00031 #include <OpenMS/METADATA/ProteinIdentification.h>
00032 #include <OpenMS/METADATA/PeptideIdentification.h>
00033 
00034 #include <vector>
00035 
00036 namespace OpenMS
00037 {
00038   namespace Internal
00039   {
00044   class MascotXMLHandler:
00045     public XMLHandler
00046   {
00047     public:
00049       MascotXMLHandler(ProteinIdentification& protein_identification, std::vector<PeptideIdentification>& identifications, const String& filename);
00050 
00052       virtual ~MascotXMLHandler();
00053       
00054       // Docu in base class
00055       virtual void endElement(const XMLCh* const /*uri*/, const XMLCh* const /*local_name*/, const XMLCh* const qname);
00056       
00057       // Docu in base class
00058       virtual void startElement(const XMLCh* const /*uri*/, const XMLCh* const /*local_name*/, const XMLCh* const qname, const xercesc::Attributes& attributes);
00059       
00060       // Docu in base class
00061       virtual void characters(const XMLCh* const chars, unsigned int /*length*/);
00062       
00063     private:
00064       
00065       ProteinIdentification& protein_identification_;       
00066       std::vector<PeptideIdentification>& id_data_;       
00067       ProteinHit actual_protein_hit_;                       
00068       PeptideHit actual_peptide_hit_;
00069       UInt peptide_identification_index_;
00070       String tag_;
00071       DateTime date_;
00072       String date_time_string_;
00073       UInt actual_query_;
00074       ProteinIdentification::SearchParameters search_parameters_;
00075       String identifier_;
00076   };
00077 
00078   } // namespace Internal
00079 } // namespace OpenMS
00080 
00081 #endif // OPENMS_FORMAT_HANDLERS_MASCOTXMLHANDLER_H

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