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BaseAlignment Member List

This is the complete list of members for BaseAlignment, including all inherited members.

BaseAlignment()BaseAlignment [inline]
buildConsensusVectorType_(UInt map_index, std::vector< ConsensusElementType > &cons_map)BaseAlignment [inline, protected]
buildConsensusVectorTypeInsertInGroup_(UInt map_index, std::vector< ConsensusElementType > &cons_map)BaseAlignment [inline, protected]
check_defaults_DefaultParamHandler [protected]
ConsensusElementType typedefBaseAlignment
ConsensusVectorType typedefBaseAlignment
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandler [protected]
defaultsToParam_()DefaultParamHandler [protected]
ElementContainerType typedefBaseAlignment
ElementType typedefBaseAlignment
error_name_DefaultParamHandler [protected]
final_consensus_map_BaseAlignment [protected]
getAlignmentTree() const =0BaseAlignment [pure virtual]
getDefaults() const DefaultParamHandler
getElementMapVector()BaseAlignment [inline]
getElementMapVector() const BaseAlignment [inline]
getFileNames() const BaseAlignment [inline]
getFinalConsensusMap() const BaseAlignment [inline]
getMapType() const BaseAlignment [inline]
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getSubsections() const DefaultParamHandler
getTransformationVector() const BaseAlignment [inline]
map_type_BaseAlignment [protected]
operator=(const DefaultParamHandler &rhs)DefaultParamHandler [virtual]
operator==(const DefaultParamHandler &rhs) const DefaultParamHandler [virtual]
param_DefaultParamHandler [protected]
run()=0BaseAlignment [pure virtual]
setElementMapVector(const std::vector< ElementContainerType * > &element_map_vector)BaseAlignment [inline]
setFileNames(const std::vector< String > &file_names)BaseAlignment [inline]
setFinalConsensusMap(const ConsensusMap< ConsensusElementType > &final_consensus_map)BaseAlignment [inline]
setMapType(const String &map_type)BaseAlignment [inline]
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setTransformationVector(const std::vector< Grid > &transformations)BaseAlignment [inline]
subsections_DefaultParamHandler [protected]
transformations_BaseAlignment [protected]
updateMembers_()BaseAlignment [inline, protected, virtual]
~BaseAlignment()BaseAlignment [inline, virtual]
~DefaultParamHandler()DefaultParamHandler [virtual]


Generated Tue Apr 1 15:36:41 2008 -- using doxygen 1.5.4 OpenMS / TOPP 1.1