a_ | TOFCalibration | [private] |
acc_ | TOFCalibration | [private] |
applyTOFConversion_(MSExperiment< PickedPeakType > &calib_spectra) | TOFCalibration | [private] |
averageCoefficients_() | TOFCalibration | [private] |
averageErrors_() | TOFCalibration | [private] |
b_ | TOFCalibration | [private] |
begin_ | ProgressLogger | [mutable, protected] |
c_ | TOFCalibration | [private] |
calculateCalibCoeffs_(MSExperiment< PickedPeakType > &calib_peaks_ft) | TOFCalibration | [private] |
calib_masses_ | TOFCalibration | [private] |
calib_peaks_ft_ | TOFCalibration | [private] |
calibrate(MSExperiment< RawDataPointType > &calib_spectra, MSExperiment< PeakType > &exp, std::vector< double > &exp_masses) | TOFCalibration | [inline] |
calibrate(MSExperiment< PickedPeakType > &calib_spectra, MSExperiment< PeakType > &exp, std::vector< double > &exp_masses) | TOFCalibration | [inline] |
check_defaults_ | DefaultParamHandler | [protected] |
CMD enum value | ProgressLogger | |
coeff_quad_fit_ | TOFCalibration | [private] |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | [protected] |
defaultsToParam_() | DefaultParamHandler | [protected] |
dlg_ | ProgressLogger | [mutable, protected] |
end_ | ProgressLogger | [mutable, protected] |
endProgress() const | ProgressLogger | |
error_medians_ | TOFCalibration | [private] |
error_name_ | DefaultParamHandler | [protected] |
errors_ | TOFCalibration | [private] |
exp_masses_ | TOFCalibration | [private] |
getDefaults() const | DefaultParamHandler | |
getML1s() const | TOFCalibration | [inline] |
getML2s() const | TOFCalibration | [inline] |
getML3s() const | TOFCalibration | [inline] |
getMonoisotopicPeaks_(MSExperiment< PickedPeakType > &calib_peaks, std::vector< std::vector< unsigned int > > &monoiso_peaks) | TOFCalibration | [private] |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getSubsections() const | DefaultParamHandler | |
GUI enum value | ProgressLogger | |
LogType enum name | ProgressLogger | |
matchMasses_(MSExperiment< PickedPeakType > &calib_peaks, std::vector< std::vector< unsigned int > > &monoiso_peaks, std::vector< unsigned int > &obs_masses, std::vector< double > &exp_masses, unsigned int idx) | TOFCalibration | [private] |
ml1s_ | TOFCalibration | [private] |
ml2s_ | TOFCalibration | [private] |
ml3s_ | TOFCalibration | [private] |
mQ_(double ft, unsigned int spec) | TOFCalibration | [inline, private] |
mQAv_(double ft) | TOFCalibration | [inline, private] |
NONE enum value | ProgressLogger | |
operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
param_ | DefaultParamHandler | [protected] |
PickedPeakType typedef | TOFCalibration | |
ProgressLogger() | ProgressLogger | |
RawDataPointType typedef | TOFCalibration | |
setLogType(LogType type) const | ProgressLogger | |
setML1s(const std::vector< double > &ml1s) | TOFCalibration | [inline] |
setML2s(const std::vector< double > &ml2s) | TOFCalibration | [inline] |
setML3s(const std::vector< double > &ml3s) | TOFCalibration | [inline] |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
setProgress(UInt value) const | ProgressLogger | |
spline_ | TOFCalibration | [private] |
startProgress(UInt begin, UInt end, const String &label) const | ProgressLogger | |
subsections_ | DefaultParamHandler | [protected] |
TOFCalibration() | TOFCalibration | |
type_ | ProgressLogger | [mutable, protected] |
updateMembers_() | DefaultParamHandler | [protected, virtual] |
value_ | ProgressLogger | [mutable, protected] |
~DefaultParamHandler() | DefaultParamHandler | [virtual] |
~ProgressLogger() | ProgressLogger | |
~TOFCalibration() | TOFCalibration | |