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Identifies peptides in MS/MS spectra via PepNovo.
This wrapper application serves for getting peptide identifications for MS/MS spectra. The wrapper can be executed in three different modes:
-
The whole process of identification via PepNovo is executed. Inputfile is one (or more) mz file containing the MS/MS spectra (Supported spectrum file formats are .mzXML, .mzData) for which the identifications are to be found. The results are written as an idXML output file. This mode is selected by default.
-
Only the first part of the ProteinIdentification process is performed. This means that a PepNovo input file is generated and dta files are created from the mz file. The call for the corresponding DeNovo process is written to standard output.
Consult your PepNovo reference manual for further details.
This mode is selected by the -pepnovo_in option in the command line.
-
Only the second part of the ProteinIdentification process is performed. This means that the output of pepnovo is translated into idXML.
This mode is selected by the -pepnovo_out option in the command line.
Generated Tue Apr 1 15:36:39 2008 -- using doxygen 1.5.4 |
OpenMS / TOPP 1.1 |