addPeak_(std::vector< PeakShape > &peaks_DC, PeakArea_ &area, double left_width, double right_width) | PeakPickerCWT | [protected] |
begin_ | ProgressLogger | [mutable, protected] |
check_defaults_ | DefaultParamHandler | [protected] |
CMD enum value | ProgressLogger | |
correlate_(const PeakShape &peak, const PeakArea_ &area, int direction=0) const | PeakPickerCWT | [protected] |
deconvolutePeak_(PeakShape &shape) | PeakPickerCWT | [protected] |
deconvolution_ | PeakPickerCWT | [protected] |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | [protected] |
defaultsToParam_() | DefaultParamHandler | [protected] |
determineChargeState_(std::vector< double > &peak_values) | PeakPickerCWT | [protected] |
dlg_ | ProgressLogger | [mutable, protected] |
end_ | ProgressLogger | [mutable, protected] |
endProgress() const | ProgressLogger | |
error_name_ | DefaultParamHandler | [protected] |
fillPeak_(const PeakShape &, OutputPeakType &) | PeakPickerCWT | [inline, protected] |
fillPeak_(const PeakShape &peak_shape, PickedPeak1D &picked_peak) | PeakPickerCWT | [inline, protected] |
fitPeakShape_(const PeakArea_ &area, bool enable_centroid_fit) | PeakPickerCWT | [protected] |
fwhm_bound_ | PeakPicker | [protected] |
getDefaults() const | DefaultParamHandler | |
getMaxPosition_(RawDataPointIterator first, RawDataPointIterator last, const ContinuousWaveletTransform &wt, PeakArea_ &area, int distance_from_scan_border, int ms_level, int direction=1) | PeakPickerCWT | [protected] |
getName() const | DefaultParamHandler | |
getNumberOfPeaks_(RawDataPointIterator &first, RawDataPointIterator &last, std::vector< double > &peak_values, int direction, DoubleReal resolution, ContinuousWaveletTransformNumIntegration &wt) | PeakPickerCWT | [protected] |
getParameters() const | DefaultParamHandler | |
getPeakArea_(const PeakArea_ &area, double &area_left, double &area_right) | PeakPickerCWT | [protected] |
getPeakCentroid_(PeakArea_ &area) | PeakPickerCWT | [protected] |
getPeakEndPoints_(RawDataPointIterator first, RawDataPointIterator last, PeakArea_ &area, int distance_from_scan_border, int &peak_left_index, int &peak_right_index) | PeakPickerCWT | [protected] |
getSubsections() const | DefaultParamHandler | |
GUI enum value | ProgressLogger | |
init_() | PeakPickerCWT | [protected] |
initializeWT_() | PeakPickerCWT | [protected] |
LogType enum name | ProgressLogger | |
lorentz_(double height, double lambda, double pos, double x) | PeakPickerCWT | [protected] |
noise_level_ | PeakPickerCWT | [protected] |
NONE enum value | ProgressLogger | |
operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
optimization_ | PeakPickerCWT | [protected] |
param_ | DefaultParamHandler | [protected] |
peak_bound_ | PeakPicker | [protected] |
peak_bound_cwt_ | PeakPickerCWT | [protected] |
peak_bound_ms2_level_ | PeakPicker | [protected] |
peak_bound_ms2_level_cwt_ | PeakPickerCWT | [protected] |
peak_corr_bound_ | PeakPickerCWT | [protected] |
peak_shapes_ | PeakPickerCWT | [protected] |
PeakPicker() | PeakPicker | |
PeakPickerCWT() | PeakPickerCWT | |
pick(InputPeakIterator first, InputPeakIterator last, OutputPeakContainer &picked_peak_container, int ms_level=1) | PeakPickerCWT | [inline] |
pick(const InputPeakContainer &input_peak_container, OutputPeakContainer &picked_peaks_container, int ms_level=1) | PeakPickerCWT | [inline] |
pickExperiment(InputSpectrumIterator first, InputSpectrumIterator last, MSExperiment< OutputPeakType > &ms_exp_peaks) | PeakPickerCWT | [inline] |
pickExperiment(const MSExperiment< InputPeakType > &ms_exp_raw, MSExperiment< OutputPeakType > &ms_exp_peaks) | PeakPickerCWT | [inline] |
PositionType typedef | PeakPickerCWT | |
ProgressLogger() | ProgressLogger | |
radius_ | PeakPickerCWT | [protected] |
RawDataArrayType typedef | PeakPickerCWT | |
RawDataPointIterator typedef | PeakPickerCWT | |
RawDataPointType typedef | PeakPickerCWT | |
scale_ | PeakPickerCWT | [protected] |
setLogType(LogType type) const | ProgressLogger | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
setProgress(UInt value) const | ProgressLogger | |
signal_to_noise_ | PeakPicker | [protected] |
startProgress(UInt begin, UInt end, const String &label) const | ProgressLogger | |
subsections_ | DefaultParamHandler | [protected] |
two_d_optimization_ | PeakPickerCWT | [protected] |
type_ | ProgressLogger | [mutable, protected] |
updateMembers_() | PeakPickerCWT | [protected, virtual] |
value_ | ProgressLogger | [mutable, protected] |
wt_ | PeakPickerCWT | [protected] |
wtDC_ | PeakPickerCWT | [protected] |
~DefaultParamHandler() | DefaultParamHandler | [virtual] |
~PeakPicker() | PeakPicker | [inline, virtual] |
~PeakPickerCWT() | PeakPickerCWT | [virtual] |
~ProgressLogger() | ProgressLogger | |